Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006214.1 Corchorus capsularis cultivar CVL-1 contig06233, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3836

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109--169
30
2.0
30
81
6
70
24
19
24
31
1.98
239--455
110
2.0
110
79
3
240
27
23
20
29
1.99
138--1346
427
2.8
426
87
1
1782
28
22
21
27
1.99
138--1462
428
3.1
427
85
4
1775
28
21
21
28
1.99
976--1557
269
2.2
270
90
2
929
27
21
21
29
1.99
1392--1691
110
2.7
111
86
3
426
27
22
22
28
1.99
1899--2109
111
1.9
111
81
0
251
27
19
21
30
1.98
2360--2651
112
2.6
111
84
2
343
27
20
22
29
1.98
2437--2658
111
2.0
112
88
0
329
27
22
22
27
1.99
1227--3515
969
2.4
966
92
0
3774
28
21
21
27
1.99
2471--3832
428
3.2
428
91
0
2204
28
21
22
27
1.99

Tables:   1

The End!