Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006258.1 Corchorus capsularis cultivar CVL-1 contig06277, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11604

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6156--6425
37
7.2
37
85
9
350
46
10
18
24
1.80
6156--6884
111
6.4
112
82
10
824
45
11
17
24
1.82
6412--6443
16
2.0
16
93
0
55
50
9
15
25
1.74
6380--6480
53
1.9
53
95
0
184
46
12
15
24
1.81
6428--6884
37
12.4
37
91
0
718
45
12
17
24
1.83
6334--6517
90
2.0
93
90
6
295
45
11
16
25
1.82
6880--7171
40
7.6
39
69
18
218
43
11
21
23
1.85
6860--7209
76
4.6
76
91
0
540
44
11
20
24
1.84
7178--7280
36
2.8
36
81
10
111
49
10
13
26
1.74
7268--7460
37
5.4
37
82
7
227
41
8
25
24
1.82
7302--7409
32
3.2
32
80
12
135
42
8
26
22
1.81
7273--7442
69
2.4
71
90
4
254
41
7
25
24
1.81
7394--7542
32
4.4
32
76
17
133
38
8
24
28
1.85
7273--7497
69
3.2
68
84
11
210
40
8
25
25
1.85
7452--7563
36
3.2
34
85
9
131
40
9
20
29
1.85
9761--9796
19
1.9
18
88
5
54
41
2
22
33
1.68
11076--11109
16
2.2
16
89
5
52
29
2
8
58
1.43

Tables:   1

The End!