genome.fa.s6518.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006518.1 Corchorus capsularis cultivar CVL-1 contig06539, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33616

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364--438	31	2.3	33	77	11	84	33	20	6	40	1.78
5101--5177	38	2.0	38	92	0	127	37	16	25	19	1.93
7394--7554	31	5.3	31	83	3	173	19	22	24	33	1.97
14017--14073	3	19.0	3	100	0	114	66	0	33	0	0.92
15723--15779	15	3.9	14	73	13	53	7	19	0	73	1.05
15835--15876	15	2.9	15	86	13	61	47	0	0	52	1.00
17363--17406	15	3.0	15	86	3	54	77	0	2	20	0.88
18038--18120	37	2.2	37	100	0	166	14	24	14	46	1.81
19007--19050	20	2.1	21	87	4	63	38	9	38	13	1.77
22191--22224	3	11.3	3	87	0	50	35	0	26	38	1.57
22182--22216	15	2.3	15	90	0	52	37	0	20	42	1.52
25834--25905	30	2.4	30	92	0	117	12	13	19	54	1.71
27990--28017	13	2.2	13	100	0	56	32	17	7	42	1.77
30072--30219	45	3.3	45	87	0	197	27	9	16	45	1.78
30642--30684	20	2.2	20	91	4	70	37	18	4	39	1.72
30642--30687	19	2.3	20	88	3	76	36	17	4	41	1.69
31401--31483	22	3.8	22	79	3	87	39	9	15	34	1.80
31466--31508	22	2.0	22	90	0	68	34	9	11	44	1.73
31591--31642	22	2.4	22	86	0	68	32	9	15	42	1.79
31641--31715	22	3.4	22	78	7	71	34	9	20	36	1.84
32001--32055	21	2.5	22	85	8	69	40	7	9	43	1.64
32243--32787	290	1.9	290	92	0	930	32	18	14	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33111--33341	111	2.1	112	96	1	428	28	10	23	37	1.89
33269--33606	170	2.0	167	95	1	613	25	12	25	36	1.91

Tables:   1

The End!