Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006525.1 Corchorus capsularis cultivar CVL-1 contig06546, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14700

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1102--1428
36
9.1
35
83
7
351
38
9
19
32
1.84
1101--1443
35
9.6
35
84
6
365
37
9
20
32
1.84
1092--1418
106
3.0
107
86
7
423
37
9
20
32
1.85
1101--1443
141
2.4
142
86
5
460
37
9
20
32
1.84
1484--1628
59
2.5
58
93
1
236
42
8
21
27
1.83
1490--1628
58
2.4
59
93
1
235
42
9
20
27
1.83
1490--1644
58
2.7
60
86
6
219
45
9
20
25
1.80
9400--9495
34
2.8
35
82
10
126
20
25
20
33
1.97
9811--9888
36
2.1
37
88
2
113
20
16
29
33
1.95
9902--9990
34
2.6
34
80
7
99
15
19
26
38
1.92
13921--14247
36
9.1
35
83
7
351
38
9
19
32
1.84
13920--14262
35
9.6
35
84
6
365
37
9
20
32
1.84
13911--14237
106
3.0
107
86
7
423
37
9
20
32
1.85
13920--14262
141
2.4
142
86
5
460
37
9
20
32
1.84
14303--14447
59
2.5
58
93
1
236
41
8
21
28
1.82
14309--14447
58
2.4
59
93
1
235
41
8
20
28
1.82
14309--14463
58
2.7
60
86
6
219
44
8
20
27
1.79

Tables:   1

The End!