genome.fa.s6684.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006684.1 Corchorus capsularis cultivar CVL-1 contig06705, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148991

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6735--6768	12	2.7	13	90	4	52	20	11	8	58	1.59
6765--6797	6	5.5	6	100	0	66	30	0	15	54	1.41
8289--8363	37	2.0	37	82	5	89	33	14	21	30	1.93
9210--9249	21	1.9	21	94	0	71	20	37	10	32	1.85
9442--9525	15	5.1	18	64	21	67	16	30	35	16	1.92
9429--9553	32	3.9	32	94	1	214	17	31	36	15	1.91
9585--9638	22	2.4	23	84	3	74	33	1	7	57	1.37
9971--10069	49	2.0	49	92	0	162	26	19	17	37	1.93
11243--11267	12	2.1	12	100	0	50	40	0	0	60	0.97
11220--11260	18	2.1	21	86	13	61	48	2	0	48	1.14
12484--12523	20	2.0	21	90	5	64	47	5	2	45	1.38
13928--13957	1	30.0	1	100	0	60	100	0	0	0	0.00
14990--15083	49	1.9	49	100	0	188	32	21	9	36	1.86
20722--20912	91	2.1	92	98	1	368	24	15	23	37	1.93
21596--21684	45	2.0	45	93	2	153	33	20	22	23	1.97
22284--22421	67	2.1	67	100	0	276	34	15	13	36	1.87
25697--25808	27	4.1	27	65	4	64	25	12	34	27	1.92
29140--29176	14	2.5	15	86	8	58	29	5	8	56	1.51
29876--29910	11	3.2	11	91	0	61	80	17	2	0	0.84
31664--31713	24	2.1	24	81	7	57	66	6	12	16	1.43
32078--32150	31	2.4	31	95	0	128	31	23	26	19	1.98
36951--36986	18	2.0	18	100	0	72	22	11	16	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46328--46359	2	16.0	2	100	0	64	50	0	0	50	1.00
49264--49435	87	2.0	86	86	6	240	39	22	6	30	1.81
49264--49470	87	2.4	87	82	6	233	37	23	6	32	1.81
55175--55216	23	2.0	22	86	13	61	19	16	7	57	1.62
58445--58505	30	2.0	30	96	0	113	13	22	13	50	1.75
60678--60720	12	3.6	12	77	0	50	9	2	60	27	1.40
60682--60737	18	3.3	18	75	9	64	12	3	60	23	1.47
60819--60863	18	2.5	18	81	0	54	15	6	60	17	1.56
60989--61042	12	4.5	12	71	0	54	11	7	46	35	1.67
65059--65130	36	2.0	36	100	0	144	22	13	27	36	1.92
68868--68950	42	2.0	42	100	0	166	44	21	16	16	1.86
73578--73704	42	3.0	42	98	0	245	43	19	18	18	1.89
74204--74339	16	8.6	16	83	8	170	6	16	37	38	1.75
75162--75280	16	7.4	16	76	7	116	9	19	36	34	1.84
75173--75280	48	2.2	48	85	3	137	9	20	37	32	1.84
75221--75289	32	2.2	32	86	0	93	4	17	44	33	1.68
80655--80698	21	2.1	21	82	0	52	18	31	40	9	1.81
82980--83027	21	2.3	21	82	7	53	14	29	16	39	1.88
84155--84229	29	2.7	29	72	15	77	72	4	9	14	1.25
86393--86459	27	2.4	28	87	2	91	38	5	10	44	1.63
87154--87291	56	2.4	59	89	7	203	42	10	8	38	1.70
90187--90314	33	3.8	33	92	3	213	17	35	33	13	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90187--90339	66	2.3	66	84	8	188	16	37	33	13	1.87
96494--96548	3	19.3	3	78	17	64	34	0	1	63	1.05
96510--96545	8	4.4	8	93	6	63	36	0	0	63	0.94
96494--96548	19	2.9	18	86	10	74	34	0	1	63	1.05
96504--96540	11	3.4	11	85	14	58	35	0	0	64	0.94
100849--101070	87	2.6	87	82	5	261	36	24	7	31	1.83
104899--104953	23	2.3	23	84	9	67	45	12	29	12	1.79
106376--106457	31	2.6	31	76	5	85	57	9	6	26	1.54
106702--106770	34	2.1	34	97	2	131	20	14	11	53	1.71
107061--107090	10	3.0	10	95	0	51	3	10	46	40	1.54
107815--107886	32	2.2	32	92	0	117	51	30	13	4	1.60
107820--107926	54	2.0	54	84	0	142	52	28	13	6	1.64
107815--107886	16	4.5	16	78	0	72	51	30	13	4	1.60
107856--107904	22	2.2	22	88	0	71	48	30	12	8	1.69
108087--108167	15	5.2	15	70	21	60	39	30	9	19	1.84
108075--108182	32	3.4	31	89	5	164	37	36	11	14	1.82
110932--111129	41	4.9	41	71	14	135	41	27	11	19	1.85
110973--111115	41	3.4	41	75	12	148	40	27	10	20	1.86
110932--111116	84	2.2	83	85	4	248	41	28	10	20	1.85
111224--111254	2	15.5	2	100	0	62	48	0	0	51	1.00
112236--112295	21	2.9	21	71	0	66	31	20	11	36	1.88
122087--122134	19	2.5	20	93	3	80	27	12	16	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122361--122399	18	2.2	18	100	0	78	30	5	28	35	1.79
122564--122762	96	2.1	96	98	0	380	22	6	22	49	1.71
126910--126976	21	3.2	21	91	0	107	28	25	7	38	1.83
130294--130332	10	3.6	12	74	25	50	58	5	12	23	1.54
132757--132817	27	2.2	27	82	8	70	60	11	4	22	1.50
135015--135049	18	1.9	18	88	0	52	45	2	8	42	1.49
135262--135308	23	2.0	24	83	8	60	57	19	2	21	1.51
143956--144088	37	3.5	38	80	5	135	24	13	33	27	1.93

Tables:   1

The End!