Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006738.1 Corchorus capsularis cultivar CVL-1 contig06759, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38067

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1374--1425
23
2.2
23
80
19
54
50
17
3
28
1.64
5761--5833
29
2.5
30
80
8
78
32
15
13
38
1.86
8351--8763
156
2.6
157
84
5
552
33
15
19
30
1.93
8351--8823
156
3.0
155
74
12
450
32
16
19
31
1.94
11578--11685
54
2.0
54
98
0
207
34
12
12
40
1.81
14739--15017
139
2.0
139
95
0
504
26
13
28
30
1.95
17135--17246
36
3.2
35
83
7
131
31
20
8
40
1.81
17192--17263
32
2.2
32
95
0
126
31
20
9
37
1.85
17256--17704
37
12.7
37
77
11
469
24
27
7
41
1.81
17256--17699
106
4.2
103
89
4
565
23
27
7
41
1.81
17256--17703
69
6.4
69
81
11
484
24
27
7
41
1.81
17697--17855
36
4.4
34
82
12
137
26
15
11
46
1.80
17736--17870
71
1.9
71
80
10
159
26
14
11
47
1.78
17836--18260
41
10.9
41
78
11
480
22
18
10
47
1.80
17882--18278
77
5.2
77
92
1
661
23
18
11
47
1.80
18019--18620
37
16.2
37
79
13
439
26
16
10
47
1.78
18250--18620
111
3.4
110
85
6
497
28
15
9
46
1.77
21725--21759
15
2.3
15
90
0
52
22
40
20
17
1.92
31751--31842
37
2.4
39
73
10
91
28
9
6
55
1.57
35542--35615
27
2.7
27
87
0
94
13
12
28
45
1.79

Tables:   1

The End!