Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006830.1 Corchorus capsularis cultivar CVL-1 contig06851, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67729

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1348--1742
194
2.0
194
96
0
720
34
18
15
30
1.92
7021--7082
19
3.0
21
76
13
65
24
32
19
24
1.98
7166--7209
22
2.0
22
86
0
61
29
25
22
22
1.99
12529--12576
25
2.0
22
84
11
60
64
12
4
18
1.43
13003--13032
15
1.9
16
93
6
53
46
40
13
0
1.43
13102--13176
32
2.3
32
97
0
141
53
32
12
2
1.52
13101--13207
48
2.2
48
89
0
160
51
30
13
4
1.61
13102--13192
16
5.7
16
86
0
119
52
30
12
4
1.58
13355--13425
31
2.3
31
90
2
115
39
36
9
14
1.79
13355--13408
16
3.4
16
87
5
83
38
33
11
16
1.84
13362--13415
15
3.5
15
87
5
81
38
33
9
18
1.83
15360--15410
27
1.9
26
88
4
75
15
19
9
54
1.68
18099--18530
50
8.7
50
88
2
649
37
17
28
17
1.92
18099--18575
99
4.8
100
87
3
628
36
17
28
18
1.93
27656--27722
21
3.2
21
72
16
75
34
25
11
28
1.91
28547--28578
8
4.0
8
95
0
55
84
0
0
15
0.63
29342--29386
20
2.2
20
84
4
54
66
8
8
15
1.43
30725--30783
19
2.9
21
68
14
52
38
18
3
38
1.68
30753--30784
11
2.8
12
81
18
50
46
18
0
34
1.49
32871--32944
33
2.3
34
77
13
84
8
29
51
10
1.65
36420--36464
20
2.2
20
84
4
54
66
8
8
15
1.43
38363--38425
30
2.1
30
94
5
110
19
34
17
28
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59118--59224
33
3.2
32
86
5
126
8
28
40
22
1.83
64528--64561
18
1.9
18
88
5
52
17
0
0
82
0.67
64635--64668
8
4.1
8
85
7
50
23
2
14
58
1.50
65586--65659
33
2.2
34
80
7
98
13
25
37
22
1.91
65835--67026
158
7.5
157
85
2
1499
26
22
22
28
1.99
65844--67729
317
6.0
314
82
5
2102
26
21
23
28
1.99
67031--67729
158
4.4
159
83
2
827
26
20
24
28
1.99

Tables:   1

The End!