Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006839.1 Corchorus capsularis cultivar CVL-1 contig06860, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48677

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1038--1065
2
14.0
2
100
0
56
50
0
0
50
1.00
8645--8685
19
2.2
18
86
4
55
7
39
0
53
1.29
10180--10431
35
7.3
35
75
16
265
36
8
18
36
1.81
10180--10267
16
5.1
16
69
15
59
36
7
15
39
1.77
10197--10337
17
8.1
18
64
15
80
37
7
18
36
1.78
10319--10513
43
4.5
43
92
1
327
36
8
18
35
1.81
10319--10690
86
4.2
87
77
16
382
38
7
17
36
1.79
10462--10568
56
1.9
56
98
0
205
41
4
16
37
1.70
10383--10655
143
1.9
142
95
0
492
39
7
17
35
1.78
10518--10703
43
4.3
43
92
0
273
39
7
15
37
1.76
10239--10690
229
2.0
225
88
3
674
38
7
17
35
1.79
10685--10725
21
2.0
21
85
0
55
41
4
14
39
1.67
10655--10787
56
2.4
56
85
2
178
40
6
15
37
1.72
10740--10793
21
2.6
21
87
0
81
46
0
14
38
1.45
10840--10907
35
1.9
35
81
0
82
38
8
16
36
1.80
11596--11636
17
2.4
17
87
0
55
60
29
0
9
1.28
12962--13025
12
4.9
14
71
22
50
43
4
0
51
1.22
13594--13865
88
3.0
92
86
4
390
36
13
9
40
1.78
13982--14287
160
1.9
159
93
0
531
47
9
10
32
1.70
14224--14321
34
2.8
35
87
3
153
59
4
6
30
1.41
14255--14309
17
3.2
17
71
19
51
58
5
5
30
1.44
14408--14476
35
2.0
35
97
0
129
62
2
7
27
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14141--14475
184
1.8
184
97
0
634
50
8
9
31
1.66
19686--19761
28
2.6
29
85
6
100
34
23
23
18
1.96
24560--24667
54
2.0
54
85
3
146
25
24
25
24
2.00
28006--28043
15
2.4
16
91
4
60
63
0
7
28
1.23
28148--28197
24
2.1
24
84
0
64
42
2
8
48
1.44
28420--28601
91
2.0
89
93
2
310
24
9
30
35
1.88
34756--34789
11
3.2
10
84
15
50
50
17
2
29
1.61
36178--36218
15
2.7
16
85
11
59
41
0
2
56
1.13
36162--36217
5
11.0
5
83
9
51
44
0
1
53
1.11
36745--36777
17
1.9
17
100
0
66
63
0
0
36
0.95
39162--39240
31
2.7
29
81
12
90
49
2
0
48
1.14
39422--39486
30
2.1
31
91
2
105
26
18
6
49
1.71
39428--39493
30
2.1
31
88
5
98
30
15
6
48
1.69
40285--40335
21
2.3
23
75
18
56
41
11
13
33
1.81
40284--40409
22
5.7
21
73
15
87
40
11
15
32
1.83
40568--41061
22
22.7
22
67
13
146
38
9
14
36
1.80
40549--41062
44
11.8
45
66
14
177
38
9
15
35
1.81
41142--41167
2
13.0
2
100
0
52
50
50
0
0
1.00
43297--43471
92
1.9
92
92
2
298
32
9
13
44
1.76
48296--48390
49
1.9
49
91
0
154
14
17
15
51
1.76

Tables:   1

The End!