Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006851.1 Corchorus capsularis cultivar CVL-1 contig06872, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25677

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2576--2792
37
5.9
36
88
6
260
49
10
15
25
1.75
2720--2780
19
3.4
16
68
23
50
49
4
18
27
1.68
2583--2851
37
7.3
37
88
5
185
49
9
15
25
1.75
2723--2878
40
4.2
37
81
11
158
47
7
17
28
1.73
2921--2966
23
2.0
22
83
4
56
56
4
10
28
1.53
2980--3020
19
2.2
19
87
12
59
51
0
24
24
1.49
2999--3280
26
10.8
26
76
7
245
54
2
20
23
1.55
3006--3280
51
5.3
51
74
12
202
54
2
19
23
1.55
2999--3270
104
2.6
103
88
4
375
55
2
19
22
1.54
3113--3270
25
6.1
26
72
12
74
54
0
20
24
1.49
3232--3288
23
2.9
18
77
22
69
54
0
19
26
1.44
3218--3296
25
3.4
21
85
15
79
54
0
18
26
1.44
8998--9026
13
2.1
14
93
6
51
48
10
20
20
1.79
13212--13285
12
6.7
12
69
20
54
41
1
2
54
1.23
13222--13292
2
38.0
2
75
18
55
42
2
2
52
1.31
13211--13312
13
8.1
12
69
22
59
42
1
2
52
1.27
13718--13806
46
1.9
46
95
0
160
20
6
21
51
1.70
16437--16527
27
3.3
27
90
1
128
17
13
24
45
1.84
21973--22008
18
2.0
18
94
0
63
44
13
33
8
1.74

Tables:   1

The End!