Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006926.1 Corchorus capsularis cultivar CVL-1 contig06947, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29971

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7918--7959
22
1.9
22
85
9
59
35
11
7
45
1.69
8037--8078
22
1.9
22
90
0
66
30
11
4
52
1.59
10378--10410
17
1.9
17
100
0
66
30
36
6
27
1.81
20663--20710
10
4.9
10
82
2
53
0
14
43
41
1.45
24525--24803
11
25.6
11
75
8
196
53
8
19
18
1.70
24519--24570
12
4.5
12
80
11
56
71
7
13
7
1.31
24531--24608
41
1.9
41
86
5
113
64
6
20
8
1.45
24526--24803
33
8.5
33
79
7
228
53
8
19
18
1.70
24795--24996
36
5.6
36
89
3
291
43
10
21
24
1.84
24795--25034
72
3.4
71
86
2
322
44
10
20
24
1.83
24793--25009
108
2.0
108
92
1
364
44
9
20
24
1.82
24796--25034
36
6.7
35
85
5
275
44
10
20
24
1.83
25038--25145
32
3.3
31
77
19
119
46
5
17
30
1.71
25048--25166
36
3.4
35
76
18
131
47
6
16
29
1.73
25038--25166
68
1.9
68
90
6
208
47
6
17
29
1.71
26223--26623
183
2.2
182
81
6
443
29
16
18
34
1.93
28304--28339
19
1.9
18
88
5
54
41
2
22
33
1.68
29947--29971
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!