Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006942.1 Corchorus capsularis cultivar CVL-1 contig06963, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35328

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--41
20
2.0
20
85
10
53
46
7
17
28
1.76
152--200
20
2.4
20
86
10
64
51
0
4
44
1.20
10376--10411
17
2.1
17
89
0
54
13
11
5
69
1.34
11036--11153
59
2.0
59
98
0
227
41
15
12
30
1.84
11343--11378
2
18.0
2
94
0
63
50
2
0
47
1.15
11585--11642
29
2.0
28
83
3
71
27
20
15
36
1.93
11675--11711
14
2.6
14
95
0
65
37
8
13
40
1.74
12298--12361
29
2.2
29
91
0
101
10
28
4
56
1.54
15240--16062
35
23.7
34
85
8
971
32
18
10
39
1.84
15240--16062
105
7.9
105
86
7
1089
32
18
10
39
1.84
15240--15749
16
29.1
18
65
17
234
32
17
10
38
1.85
21849--21941
44
2.1
44
97
0
177
26
18
10
44
1.82
24751--24777
8
3.4
8
100
0
54
59
0
11
29
1.32
30846--30879
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!