genome.fa.s6989.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006989.1 Corchorus capsularis cultivar CVL-1 contig07010, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51579

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1357--2400	332	3.2	327	80	8	1005	36	15	13	35	1.86
3766--3795	15	1.9	16	93	6	53	53	3	0	43	1.17
7169--7212	18	2.4	18	78	14	54	59	13	0	27	1.35
7397--7434	18	2.1	19	90	5	60	42	26	5	26	1.76
8399--8431	1	33.0	1	100	0	66	0	0	0	100	0.00
11589--11728	76	1.9	75	87	1	208	47	10	12	29	1.74
12821--12900	31	2.6	30	88	5	90	32	31	11	25	1.91
12834--12904	31	2.2	32	95	2	126	28	30	9	30	1.89
14754--14786	14	2.4	14	94	0	57	39	0	60	0	0.97
19396--19571	88	2.0	88	96	0	325	39	18	18	22	1.92
20581--20674	45	2.2	43	88	7	138	40	20	4	35	1.72
31480--31513	2	17.0	2	100	0	68	50	0	0	50	1.00
31955--31997	19	2.3	19	87	0	68	23	13	11	51	1.74
32666--32726	32	1.9	32	89	0	95	27	18	9	44	1.81
41161--41207	22	2.3	19	75	25	51	46	27	17	8	1.76
42773--42928	37	4.2	37	91	4	244	28	23	10	38	1.87
42782--42928	75	2.0	74	93	1	249	27	23	10	38	1.87
42921--42985	18	3.6	18	70	4	58	24	30	9	35	1.87
42933--42991	18	3.2	18	71	4	64	20	30	10	38	1.86
42937--43210	108	2.5	110	85	5	360	23	29	8	39	1.83
42937--43219	37	7.7	37	88	4	362	24	28	8	39	1.84
43254--43381	35	3.7	35	84	10	165	27	14	11	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43266--43402	68	2.0	69	81	8	163	28	15	10	45	1.80
43388--43571	41	4.6	41	84	9	254	21	21	11	45	1.84
43351--43571	118	1.9	116	91	1	361	23	20	11	44	1.84
43574--43800	37	6.2	36	83	8	269	25	20	9	44	1.81
43572--43800	75	3.1	73	86	6	313	25	20	9	44	1.81
43794--44239	41	10.9	41	86	1	581	26	22	11	39	1.88
44271--44540	71	3.8	71	94	1	443	23	23	10	42	1.84
44354--44540	31	5.5	31	66	28	105	24	22	8	44	1.81
44383--44500	36	3.3	36	67	27	106	22	23	11	42	1.85
44392--44512	40	3.2	40	68	27	129	22	23	9	43	1.83
50846--50913	34	2.0	34	100	0	136	35	11	2	50	1.54
51165--51225	21	3.2	21	73	26	80	44	4	11	39	1.62
51187--51215	15	1.9	15	100	0	58	62	3	6	27	1.37

Tables:   1

The End!