Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007118.1 Corchorus capsularis cultivar CVL-1 contig07139, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32293

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
315--343
10
2.9
10
100
0
58
10
0
37
51
1.36
1161--1212
26
2.1
26
85
7
72
38
9
1
50
1.46
4632--5228
22
27.6
22
69
12
213
35
14
10
39
1.81
4632--5228
44
13.8
43
69
11
242
35
14
10
39
1.81
5156--5228
19
3.6
20
79
7
76
30
16
10
42
1.82
5334--5377
22
2.0
22
86
0
61
34
11
13
40
1.81
5342--5503
22
7.3
22
72
11
107
32
15
10
41
1.81
5673--5812
22
6.3
22
78
9
131
39
20
8
32
1.82
5680--5768
46
1.9
46
81
4
108
38
19
10
32
1.85
5673--5814
68
2.1
66
83
5
169
39
20
8
31
1.82
6152--6228
38
2.1
36
88
7
111
58
14
14
12
1.64
6328--6393
31
2.1
31
91
5
107
48
3
19
28
1.64
6505--6612
40
2.7
40
86
0
144
35
9
8
47
1.66
6597--6719
22
5.6
22
71
6
70
34
14
8
41
1.77
6839--6898
22
2.7
22
76
5
59
38
10
13
38
1.78
6955--7002
16
2.7
18
81
9
55
41
14
8
35
1.76
6863--7177
22
14.5
22
71
11
163
36
14
9
40
1.78
7258--7403
44
3.3
44
75
7
134
32
13
10
43
1.78
7285--7362
22
3.6
22
85
1
104
35
15
7
41
1.76
7259--7403
22
6.6
22
77
6
98
33
12
11
43
1.78
7450--7543
38
2.5
37
78
13
95
58
12
15
12
1.63
7450--7543
37
2.5
37
78
13
104
58
12
15
12
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7995--8038
21
2.1
21
87
8
63
22
25
11
40
1.87
8036--8080
14
2.9
16
80
16
58
17
26
2
53
1.56
11109--11141
17
1.9
17
100
0
66
27
6
36
30
1.81
11493--11854
156
2.3
154
80
8
387
36
18
14
30
1.91
14689--14725
18
2.0
19
89
5
58
29
5
32
32
1.80
16686--16719
1
34.0
1
87
0
50
94
0
0
5
0.32
16686--16719
11
3.2
11
95
4
61
94
0
0
5
0.32
23678--23712
6
6.2
6
87
12
56
0
28
0
71
0.86
23943--23984
13
3.2
13
86
6
50
78
0
0
21
0.75
23949--23986
12
3.0
13
88
3
51
78
0
0
21
0.74
25592--25635
2
21.5
2
90
4
70
47
0
4
47
1.22
26878--26915
11
3.5
11
85
10
51
57
2
0
39
1.12
28975--29012
11
3.5
11
85
10
51
57
2
0
39
1.12
30845--30878
6
5.3
6
93
6
50
14
0
0
85
0.60
30845--30878
7
5.1
7
96
3
54
14
0
0
85
0.60
30845--30878
13
2.7
12
86
13
50
14
0
0
85
0.60
31380--31420
17
2.5
17
88
11
59
82
0
17
0
0.66
31384--31418
14
2.6
14
86
4
54
85
0
14
0
0.59
31603--32146
157
3.5
157
82
6
654
30
15
19
34
1.93

Tables:   1

The End!