Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007147.1 Corchorus capsularis cultivar CVL-1 contig07168, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33091

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12811--12855
2
22.5
2
86
0
63
48
6
0
44
1.29
18651--18683
17
1.9
17
100
0
66
24
18
18
39
1.92
22844--22883
21
1.9
21
89
0
62
0
35
7
57
1.27
22904--22939
18
2.0
18
94
0
63
5
30
5
58
1.44
22867--22956
46
2.0
46
100
0
180
7
31
8
52
1.61
23081--23265
91
2.0
91
100
0
370
29
13
25
31
1.94
26161--26216
28
2.0
28
85
0
76
32
7
17
42
1.77
27724--27839
48
2.4
48
83
7
155
25
31
6
36
1.81
28425--28484
29
2.1
29
87
0
84
48
6
5
40
1.51
28887--28984
21
4.9
19
80
7
97
27
21
12
38
1.89
28890--28984
40
2.4
40
96
0
181
26
22
12
38
1.90
28911--28984
19
3.8
19
80
7
94
25
20
13
40
1.89
31793--31889
22
4.6
22
65
19
71
37
13
8
41
1.74
31793--31944
62
2.5
62
94
0
259
34
14
9
42
1.78
32199--32286
23
3.9
22
83
2
95
37
13
7
40
1.74
32223--32261
11
3.5
11
79
6
51
46
5
5
43
1.48
31848--32306
22
21.0
22
67
14
121
36
15
9
38
1.80
32180--32409
22
10.4
22
70
16
77
36
14
7
40
1.75
32576--32696
22
5.5
22
76
7
111
33
14
10
41
1.81
32551--32696
44
3.3
44
74
7
143
32
14
10
41
1.81
32953--33020
32
2.1
31
84
10
84
45
4
20
29
1.70
33048--33091
2
22.0
2
86
9
63
50
0
4
45
1.22

Tables:   1

The End!