genome.fa.s7149.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007149.1 Corchorus capsularis cultivar CVL-1 contig07170, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21760

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2778--2864	36	2.6	34	75	17	92	54	9	16	20	1.69
2829--2898	30	2.3	31	87	7	108	51	7	14	27	1.68
2890--3090	22	9.4	22	73	12	82	52	4	21	21	1.64
2916--3110	20	9.2	20	71	19	80	53	4	21	21	1.62
2979--3020	8	5.4	8	80	5	50	59	2	21	16	1.48
2897--3232	128	2.5	128	87	8	451	53	4	20	20	1.62
3093--3123	13	2.4	13	94	0	53	54	3	16	25	1.56
3100--3160	30	2.1	28	87	6	86	59	3	18	19	1.52
3148--3329	22	8.3	22	69	15	101	56	4	19	19	1.58
3123--3202	42	1.9	42	84	5	108	56	2	21	20	1.54
2965--3232	140	1.9	142	90	3	434	54	4	20	20	1.62
3138--3283	47	3.3	47	77	15	150	54	5	19	20	1.63
2958--3266	140	2.2	140	86	6	430	54	3	20	21	1.60
3290--3329	15	2.7	15	88	3	55	60	2	20	17	1.48
3292--3437	14	10.3	14	74	16	86	56	4	22	16	1.59
3312--3397	34	2.5	34	94	0	145	53	5	22	18	1.65
3326--3393	20	3.7	20	72	22	67	54	5	22	17	1.64
3352--3562	7	31.7	7	66	19	96	56	3	23	16	1.55
3352--3417	27	2.5	26	83	11	89	59	1	24	15	1.45
3382--3558	19	9.0	19	68	16	103	57	3	23	15	1.54
3299--3518	100	2.2	99	85	4	280	56	5	22	16	1.59
3449--3555	46	2.3	46	86	1	142	57	2	23	16	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3501--3587	27	3.3	26	75	15	88	55	3	24	17	1.57
3481--3593	53	2.1	53	86	0	163	55	2	25	15	1.53
3549--3673	34	3.6	34	77	9	128	52	4	25	18	1.63
3663--3777	50	2.3	49	82	8	135	53	6	14	25	1.64
3698--3764	21	3.1	21	76	18	75	55	4	13	26	1.57
3668--3730	29	2.2	28	77	8	65	55	6	15	22	1.63
3689--3764	36	2.1	34	81	15	84	56	3	14	25	1.55
6191--6342	40	4.0	40	78	14	196	31	17	21	30	1.96
6250--6357	31	3.2	31	72	20	108	34	15	24	25	1.95
6207--6357	71	2.1	71	100	0	302	33	15	23	27	1.95
6403--6502	31	3.3	31	68	16	91	25	19	20	36	1.95
6403--6562	60	2.7	60	91	0	248	26	17	18	36	1.93
7612--7643	3	10.7	3	100	0	64	34	0	0	65	0.93
11105--11133	3	9.7	3	100	0	58	68	0	0	31	0.89
12002--12040	18	2.2	18	90	0	60	51	2	15	30	1.57
15875--16123	41	6.1	41	83	7	285	45	10	18	25	1.81
16059--16422	37	9.8	37	92	2	579	44	8	21	25	1.80
16059--16422	186	2.0	185	90	2	579	44	8	21	25	1.80
16857--16923	22	3.2	22	69	26	72	50	14	14	19	1.77
16855--17260	41	10.1	41	88	5	596	49	12	18	20	1.79
16855--17260	160	2.5	161	88	5	644	49	12	18	20	1.79
16855--17253	119	3.3	120	85	8	569	49	12	18	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17784--18015	36	6.3	37	80	8	181	48	12	15	22	1.79
17905--18272	36	10.6	35	76	11	195	43	10	19	26	1.84
17918--18052	70	1.9	74	84	6	188	52	11	12	22	1.72
18078--18280	68	3.0	68	89	0	298	37	9	24	28	1.87
18078--18293	36	6.2	36	83	8	259	38	9	23	28	1.86
19291--19895	109	5.5	109	94	2	1036	35	15	14	35	1.88
19221--19895	219	3.1	217	91	3	1073	35	15	14	34	1.89
19221--19895	328	2.0	329	92	2	1129	35	15	14	34	1.89
20248--20845	108	5.5	109	91	2	954	35	14	14	35	1.87
20178--20845	218	3.0	217	89	3	1011	35	15	14	35	1.87
21140--21583	110	4.1	109	91	2	691	37	15	13	33	1.87
21140--21583	217	2.0	218	91	2	723	37	15	13	33	1.87

Tables:   1

The End!