Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007190.1 Corchorus capsularis cultivar CVL-1 contig07211, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45638

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3101--3258
65
2.4
65
85
2
201
39
12
22
25
1.88
3631--3767
27
5.4
27
63
19
78
34
11
27
26
1.91
3603--3973
50
7.4
50
91
0
499
36
11
26
24
1.90
3594--4016
150
2.8
150
83
3
526
36
11
26
25
1.90
3603--4046
50
8.8
51
86
4
229
35
11
27
25
1.91
7035--7078
14
3.1
14
81
9
54
77
2
20
0
0.88
7034--7071
20
1.9
20
88
0
58
73
2
23
0
0.95
10044--10086
6
7.2
6
97
0
68
51
11
0
37
1.39
11423--11462
12
3.3
12
89
0
62
10
32
27
30
1.89
14517--14569
15
3.5
15
86
0
70
35
26
22
15
1.93
16890--16927
19
2.0
20
85
15
53
63
2
5
28
1.30
17591--17879
145
2.0
144
91
0
461
24
17
22
35
1.95
24557--24590
10
3.3
10
87
4
50
14
0
0
85
0.60
26700--26773
31
2.3
32
84
9
107
50
4
13
32
1.60
31015--31054
20
2.0
20
95
0
71
25
12
20
42
1.86
32199--32568
183
2.0
182
96
1
688
18
13
19
48
1.80
32963--33008
23
2.0
23
95
0
83
21
10
19
47
1.80
33550--33581
12
2.7
12
95
0
55
56
0
0
43
0.99

Tables:   1

The End!