Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007232.1 Corchorus capsularis cultivar CVL-1 contig07253, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33956

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1855--1887
16
2.1
16
100
0
66
57
6
36
0
1.23
7031--7129
22
4.5
22
78
7
92
37
10
12
40
1.76
7095--7263
22
7.7
21
70
13
81
34
18
10
36
1.85
7156--7263
45
2.4
44
80
10
121
34
18
9
37
1.83
7332--7414
22
3.8
22
66
12
53
40
20
7
31
1.79
9566--9617
26
2.0
26
88
0
77
57
5
9
26
1.53
9673--9701
15
1.9
15
100
0
58
41
0
3
55
1.17
10303--10830
266
2.0
265
96
1
968
31
17
15
35
1.91
11001--11051
11
4.6
11
78
7
50
49
1
0
49
1.12
12682--12844
55
3.0
54
82
3
202
32
21
26
19
1.97
12682--12844
54
3.0
53
83
3
200
32
21
26
19
1.97
12989--13152
55
3.0
54
86
3
222
32
21
27
18
1.97
12642--13280
308
2.1
307
91
0
1044
32
19
27
20
1.97
13505--13554
17
2.9
17
90
0
82
30
16
34
20
1.94
27824--27874
25
2.0
25
85
11
68
52
1
7
37
1.42
28205--28282
40
1.9
39
82
12
95
52
7
5
34
1.52
28768--28837
29
2.4
29
85
2
86
38
28
12
20
1.89
30939--31233
149
2.0
149
99
0
581
34
14
18
32
1.91

Tables:   1

The End!