Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007259.1 Corchorus capsularis cultivar CVL-1 contig07280, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10370

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
335--570
43
5.5
41
80
7
222
55
6
19
18
1.64
338--641
21
13.9
21
71
15
154
56
6
18
18
1.63
548--603
15
3.9
15
74
9
62
57
5
21
16
1.59
3365--3400
14
2.6
14
87
12
56
36
8
19
36
1.82
4967--5085
50
2.4
50
84
1
157
35
15
13
35
1.87
5516--5859
69
5.0
69
86
6
427
24
28
18
28
1.98
5516--5882
139
2.7
135
82
6
429
24
27
18
29
1.98
6081--6111
11
2.8
11
100
0
62
90
0
9
0
0.46
6081--6157
27
3.1
25
74
20
72
77
0
14
7
0.97
6084--6171
27
3.3
27
70
3
70
73
0
18
7
1.06
9111--9621
51
10.1
50
77
4
488
41
4
16
37
1.69
9120--9582
101
4.6
100
90
1
703
40
4
16
37
1.70
10262--10349
26
3.3
26
66
25
74
52
6
17
23
1.68
10263--10368
55
1.9
55
98
0
203
50
7
16
25
1.70
10278--10367
29
3.2
29
64
25
75
50
8
15
25
1.73

Tables:   1

The End!