Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007351.1 Corchorus capsularis cultivar CVL-1 contig07372, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54388

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
908--941
17
2.0
17
88
0
50
14
0
2
82
0.79
4066--4090
9
2.8
9
100
0
50
8
0
0
92
0.40
12104--12137
16
2.2
16
89
5
52
29
2
8
58
1.43
24619--25396
35
22.7
35
77
12
695
34
16
10
38
1.83
24619--25396
71
11.3
69
76
11
635
34
16
10
38
1.83
24808--24863
25
2.2
25
87
3
76
35
14
8
41
1.77
24738--25242
96
5.1
96
84
10
638
33
16
10
39
1.83
24773--24886
61
1.9
60
90
5
185
33
14
12
40
1.83
24904--24959
25
2.2
25
87
3
76
35
14
8
41
1.77
24869--24982
61
1.9
60
90
5
185
33
14
12
40
1.83
24656--25331
96
6.6
101
83
7
379
33
16
10
39
1.83
28795--29201
71
5.7
71
75
6
349
37
28
16
17
1.91
28794--29196
36
11.3
35
73
5
270
37
29
16
17
1.91
28795--29201
107
3.8
106
79
5
415
37
28
16
17
1.91
30299--30339
18
2.2
19
86
4
57
2
17
0
80
0.82
30295--30330
16
2.3
16
90
4
56
2
19
0
77
0.88
31379--31405
2
13.5
2
100
0
54
51
0
0
48
1.00
34864--34894
10
3.1
10
95
0
53
22
9
16
51
1.73
38979--39043
25
2.5
25
70
5
67
26
15
6
52
1.66
49909--49963
10
5.5
10
100
0
110
49
20
9
21
1.76
50741--50774
12
2.7
13
90
4
52
20
11
8
58
1.59
50771--50810
6
6.5
6
88
5
62
32
0
17
50
1.47

Tables:   1

The End!