Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007439.1 Corchorus capsularis cultivar CVL-1 contig07460, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15365

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3758--3798
21
2.0
21
85
0
55
29
19
9
41
1.83
7785--7949
41
4.1
40
89
4
242
45
10
17
26
1.81
7924--8729
37
21.6
37
81
8
906
45
8
19
25
1.79
7924--8729
73
10.8
72
82
7
827
45
8
19
25
1.79
8107--8140
14
2.4
14
85
0
50
38
11
20
29
1.88
8070--8177
51
2.1
51
87
0
162
42
11
20
25
1.85
8038--8205
88
1.9
87
90
1
264
41
10
23
25
1.85
8121--9082
73
13.3
69
78
10
578
45
9
19
25
1.81
8121--9082
37
26.6
36
81
9
780
45
9
19
25
1.81
8769--8829
18
3.3
18
63
4
50
44
14
18
22
1.86
9011--9118
32
3.2
32
80
5
108
41
6
23
28
1.79
9022--9143
36
3.5
36
82
8
146
41
6
22
28
1.79
9028--9174
36
4.2
36
79
6
133
43
7
20
28
1.79
10605--10662
15
3.8
15
90
4
89
5
15
39
39
1.70
10636--10699
6
10.5
6
74
15
51
3
20
46
29
1.66
10652--10696
17
2.7
16
86
10
63
2
22
53
22
1.57

Tables:   1

The End!