Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007497.1 Corchorus capsularis cultivar CVL-1 contig07518, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85510

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1154--1206
26
2.1
27
86
10
76
54
1
37
5
1.35
1762--1788
14
1.9
14
100
0
54
44
0
11
44
1.39
2966--3001
19
1.9
18
88
5
54
41
2
22
33
1.68
11032--11119
41
2.1
41
85
0
122
48
20
11
19
1.79
19985--20069
32
2.7
31
83
5
107
38
35
9
16
1.81
19985--20104
17
7.3
16
72
9
82
40
35
9
15
1.79
27021--27099
38
2.1
38
88
2
115
13
17
11
56
1.66
28329--28431
22
4.7
22
66
13
61
45
6
12
34
1.69
28554--28579
2
13.0
2
100
0
52
50
0
0
50
1.00
37279--37318
21
1.9
21
89
0
62
42
0
2
55
1.13
37810--37878
32
2.2
31
86
2
93
34
21
21
21
1.97
37908--38166
129
2.0
129
84
0
338
33
20
13
32
1.92
45544--45807
131
2.0
132
90
5
415
50
1
10
37
1.47
55625--55706
20
4.2
20
66
17
55
18
12
18
51
1.76
55598--55719
58
2.1
58
96
0
226
18
12
18
50
1.77
60855--60911
28
2.0
28
96
0
105
29
7
17
45
1.75
62676--62714
19
1.9
19
85
10
51
35
38
0
25
1.56
63509--63535
14
1.9
14
100
0
54
11
0
88
0
0.50
69916--69974
26
2.2
27
81
6
66
20
20
27
32
1.97
75472--75684
111
1.9
109
88
1
318
29
14
14
41
1.85
79863--79902
20
2.0
20
85
5
53
22
37
2
37
1.68
84870--84974
33
3.2
32
80
10
97
23
8
20
47
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85004--85108
33
3.2
33
93
0
174
29
10
16
43
1.81

Tables:   1

The End!