Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007570.1 Corchorus capsularis cultivar CVL-1 contig07591, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21019

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2944--3011
27
2.5
28
83
11
88
27
14
25
32
1.95
5329--5395
28
2.4
28
97
0
125
62
2
7
26
1.36
5317--5393
28
2.7
29
87
6
111
61
3
6
28
1.39
7670--7841
86
2.0
86
98
0
335
36
12
10
41
1.77
8608--8683
31
2.4
32
84
2
100
38
13
25
23
1.91
11945--12023
28
2.8
29
86
5
108
50
3
1
44
1.28
11948--12034
2
46.5
2
78
17
89
50
3
1
44
1.26
16668--16950
22
13.1
22
70
15
126
35
15
9
39
1.79
16679--16779
45
2.3
46
83
11
122
36
13
9
39
1.79
16681--16932
126
2.0
127
82
2
310
34
15
9
40
1.79
17063--17198
66
2.1
66
81
2
157
34
15
10
39
1.81
17113--17238
22
5.6
22
72
12
94
33
14
11
40
1.82
17283--17640
22
16.5
22
69
15
153
36
18
8
36
1.81
17098--17640
44
12.3
44
67
15
196
35
17
9
37
1.82
17978--18024
15
3.3
15
74
14
55
57
0
8
34
1.29
18051--18116
31
2.1
32
88
5
100
48
3
19
28
1.64
18882--18973
27
3.3
27
79
5
112
21
28
16
33
1.95
20758--20806
21
2.3
21
85
0
62
10
32
28
28
1.90

Tables:   1

The End!