Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008054.1 Corchorus capsularis cultivar CVL-1 contig08075, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23591

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
661--934
51
5.5
51
74
9
224
41
3
15
39
1.63
651--932
150
1.9
150
80
8
333
41
3
15
39
1.63
1430--2107
35
19.7
35
85
4
815
38
10
17
33
1.83
1755--1845
8
10.6
8
69
13
56
40
8
14
36
1.77
5490--5530
21
2.0
21
90
0
64
39
7
21
31
1.81
11419--11492
22
3.3
22
76
10
87
9
24
47
18
1.78
13814--13839
10
2.6
10
100
0
52
92
0
0
7
0.39
19163--19204
23
1.9
23
90
9
70
35
11
28
23
1.91
19167--19214
21
2.2
23
81
7
55
39
12
25
22
1.89
22408--22481
22
3.3
21
71
17
69
8
22
45
22
1.78

Tables:   1

The End!