Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008195.1 Corchorus capsularis cultivar CVL-1 contig08216, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43353

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19--1974
332
5.9
329
80
5
2018
34
16
14
35
1.89
19--1974
988
2.0
983
82
5
2354
34
16
14
35
1.89
2591--2641
22
2.2
23
79
13
59
49
7
1
41
1.43
2695--4961
322
6.9
322
78
9
1985
33
16
14
35
1.89
5037--5507
239
2.0
240
85
2
644
35
16
16
30
1.92
5419--6236
424
1.9
423
82
5
1026
35
16
13
34
1.88
5977--6637
362
1.8
358
84
2
901
34
17
14
33
1.90
5843--7928
333
6.2
330
78
8
1796
34
17
13
34
1.89
7694--8161
233
2.0
233
84
1
607
34
16
16
33
1.91
7927--8885
330
2.9
328
81
5
1130
34
16
14
34
1.89
9606--13904
330
12.9
330
75
9
3151
33
17
15
33
1.91
12440--13904
332
4.5
325
82
5
1606
33
16
16
34
1.91
12440--13904
649
2.2
650
82
5
1751
33
16
16
34
1.91
20967--21049
41
2.0
41
97
0
157
31
19
28
20
1.97
34902--34935
17
2.0
17
88
0
50
58
0
2
38
1.13

Tables:   1

The End!