genome.fa.s8238.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008238.1 Corchorus capsularis cultivar CVL-1 contig08259, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45574

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4349--4379	15	2.1	14	94	5	53	3	0	38	58	1.15
5022--5356	98	3.4	99	85	4	412	22	18	23	35	1.95
5151--5316	35	4.9	35	72	14	134	19	16	24	39	1.92
5247--5330	35	2.4	35	80	7	91	23	14	22	39	1.91
5451--5725	36	7.7	36	70	7	193	17	16	29	36	1.92
5415--5514	36	3.0	31	72	17	85	18	15	32	35	1.91
5450--5755	106	2.9	107	87	1	427	17	16	29	36	1.93
5700--5978	102	2.7	102	83	4	317	18	18	22	40	1.92
13271--13312	21	2.0	21	95	0	75	28	21	11	38	1.89
18785--18887	42	2.5	42	87	3	136	26	38	29	5	1.79
18871--18897	10	2.7	10	100	0	54	25	51	22	0	1.48
24474--24565	33	2.8	33	85	4	98	25	35	27	11	1.91
24486--24565	33	2.5	33	87	2	108	25	37	25	12	1.91
26178--26271	33	2.8	33	79	3	100	10	29	36	23	1.89
27333--27372	12	3.3	12	89	0	62	30	27	32	10	1.89
30591--30621	12	2.7	12	95	5	55	51	16	9	22	1.73
39004--39127	39	3.4	38	71	21	129	42	7	20	29	1.79
38812--39153	71	4.8	71	86	1	400	42	8	19	29	1.80
38812--39194	142	2.7	142	79	4	344	42	8	20	28	1.81
39175--39228	28	2.0	27	88	3	81	48	7	14	29	1.71
39196--39414	37	6.0	37	86	3	264	45	8	20	26	1.79
39524--40274	37	20.8	37	86	5	1049	40	6	27	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39524--40274	180	4.2	182	90	4	1100	40	6	27	25	1.81
39524--40275	143	5.2	145	89	4	1030	40	7	26	25	1.81
39852--39911	19	3.2	19	65	21	54	41	3	30	25	1.71
39871--39930	18	3.3	18	65	21	52	41	6	26	25	1.80
40101--40160	19	3.2	19	65	21	54	41	3	30	25	1.71
40263--40373	36	3.1	36	89	1	168	38	8	26	27	1.84
42890--42923	12	2.8	12	90	0	59	11	32	26	29	1.92
43869--43897	12	2.5	12	94	5	51	82	0	0	17	0.66

Tables:   1

The End!