genome.fa.s8394.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008394.1 Corchorus capsularis cultivar CVL-1 contig08415, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58670

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563--606	16	2.8	16	79	3	54	52	4	2	40	1.34
2788--2830	22	2.0	22	90	0	68	39	2	18	39	1.64
5402--5494	16	5.8	17	77	11	106	55	30	10	3	1.50
5403--5500	32	3.1	32	95	0	169	54	31	11	3	1.51
5656--5760	32	3.3	32	86	6	151	38	33	10	18	1.85
6049--6114	25	2.5	26	85	7	80	74	1	1	22	0.99
6049--6113	8	8.1	8	71	6	51	75	1	1	21	0.97
6434--6510	20	3.9	19	79	6	82	51	1	1	45	1.17
6450--6556	11	10.4	11	72	15	50	50	0	4	44	1.22
6455--6545	9	9.3	9	70	15	56	52	0	4	42	1.21
6609--6648	20	2.0	20	85	0	53	40	42	15	2	1.60
8058--8302	124	2.0	123	81	6	291	52	2	10	35	1.49
9265--9291	3	9.0	3	100	0	54	33	0	33	33	1.58
9839--9886	3	16.3	3	95	4	89	66	0	0	33	0.92
10310--10357	24	2.0	24	91	0	78	27	22	14	35	1.93
14174--14274	49	2.1	49	88	3	150	46	6	21	24	1.76
14338--14378	21	1.9	22	90	5	66	51	4	26	17	1.65
14374--14414	22	1.9	21	85	14	57	60	2	21	14	1.45
14478--14525	14	3.3	14	72	11	51	60	2	20	16	1.46
14311--14507	36	5.4	36	83	7	233	56	3	24	14	1.54
14593--14750	68	2.3	67	89	4	237	47	6	20	25	1.74
14665--14787	57	2.1	59	83	3	151	43	6	21	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15081--15141	26	2.3	26	85	2	86	44	6	4	44	1.51
15597--15636	21	1.9	21	94	0	71	60	7	7	25	1.50
16223--16268	23	2.0	23	83	8	58	19	26	6	47	1.73
16449--16521	32	2.2	33	85	2	94	20	26	2	50	1.61
16555--16625	33	2.2	33	92	0	115	33	19	15	30	1.93
16578--16685	52	2.1	52	94	0	189	40	19	12	26	1.88
16680--16736	29	2.0	29	96	0	105	29	22	14	33	1.93
21953--22007	21	2.7	21	89	10	80	27	3	20	49	1.65
33742--33956	111	1.9	111	99	0	421	40	24	10	25	1.86
34397--34789	209	1.9	209	94	0	687	47	15	16	21	1.83
38264--38322	29	2.0	29	87	6	84	20	25	3	50	1.63
38322--38371	17	3.1	17	72	16	52	18	22	2	58	1.49
38354--38414	14	4.4	14	75	8	70	18	19	4	57	1.58
38356--38425	28	2.4	29	79	6	81	18	18	4	58	1.55
38398--38804	22	19.5	22	70	20	220	21	20	3	54	1.58
38356--38462	15	7.4	14	72	13	74	20	18	3	57	1.56
38392--38740	121	2.9	122	74	18	264	21	20	3	55	1.58
38583--38776	35	5.5	36	74	10	125	22	20	3	54	1.58
38640--38740	14	7.3	14	72	10	64	22	19	5	51	1.68
38398--38807	105	3.9	104	72	15	314	21	20	3	54	1.58
38639--38807	85	2.0	83	82	6	207	22	20	4	53	1.62
38827--38918	30	3.0	30	82	4	94	21	18	10	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42213--42261	21	2.3	21	85	0	62	14	30	26	28	1.95
44363--44467	27	4.2	27	77	20	138	49	5	23	20	1.70
46734--46829	33	3.1	30	84	11	131	23	40	27	8	1.83
49155--49261	33	3.2	33	84	5	110	8	28	40	23	1.83
52997--53063	33	2.0	33	91	0	107	25	40	23	10	1.86
57417--57633	35	6.9	31	72	18	116	20	22	3	54	1.59
57456--57514	29	2.0	29	83	6	75	18	25	5	50	1.67
57491--57655	7	23.6	7	67	4	91	19	23	2	55	1.55
57527--58012	42	12.0	42	66	20	144	20	20	3	54	1.59
57552--57634	28	3.0	28	83	0	121	19	21	3	55	1.58
57608--57726	22	5.6	21	79	10	109	21	21	4	52	1.63
57755--57939	7	26.7	7	71	13	53	19	20	3	56	1.57
57806--57939	14	9.5	14	70	16	71	20	20	4	55	1.61
57808--57895	35	2.5	36	80	10	110	21	19	3	55	1.57
57834--57894	22	2.9	21	76	11	63	22	14	4	57	1.57
57843--58010	22	7.9	22	75	12	145	22	19	4	54	1.60

Tables:   1

The End!