Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008427.1 Corchorus capsularis cultivar CVL-1 contig08448, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26833

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2417--2479
30
2.1
30
91
5
101
23
44
22
9
1.82
8488--8563
30
2.5
29
83
8
89
23
44
22
9
1.81
11620--11652
6
5.5
6
92
0
57
54
18
0
27
1.44
11649--11693
13
3.5
13
90
3
74
55
8
13
22
1.65
11649--11701
25
2.1
25
89
6
81
58
9
11
20
1.60
17200--17330
30
4.3
31
87
11
134
22
42
25
8
1.82
17200--17306
30
3.5
30
92
3
160
23
42
25
8
1.82
21079--21204
36
3.5
36
78
1
108
30
23
9
36
1.87
21172--21250
32
2.5
32
87
8
124
26
25
12
35
1.92
21188--21347
37
4.4
37
77
14
93
24
23
10
41
1.86
21246--21601
41
8.8
41
91
2
551
22
20
9
47
1.79
21254--21656
123
3.3
118
80
12
433
22
19
9
48
1.78
21608--22991
37
36.9
37
77
10
513
25
19
9
45
1.79
21635--21692
19
3.1
18
72
5
53
24
17
5
53
1.64
21996--22144
72
2.1
72
85
2
201
30
19
9
40
1.83
22214--22547
41
8.1
41
88
0
461
23
19
8
48
1.77
21079--23074
946
2.1
947
94
0
3476
25
19
9
44
1.81

Tables:   1

The End!