genome.fa.s8458.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008458.1 Corchorus capsularis cultivar CVL-1 contig08479, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109319

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556--618	2	31.0	2	81	15	67	49	0	7	42	1.32
562--618	21	2.6	21	86	8	69	49	0	8	42	1.34
7472--7511	15	2.7	15	84	0	53	82	0	10	7	0.84
7590--7677	44	2.0	44	100	0	176	38	20	11	29	1.87
8085--8142	6	9.7	6	84	0	80	17	29	36	17	1.92
12312--12365	6	9.2	6	83	4	65	16	33	33	16	1.92
12315--12358	23	1.9	23	95	0	79	15	31	34	18	1.92
14933--14976	18	2.4	18	88	0	61	29	27	22	20	1.99
17356--17400	21	2.1	21	100	0	90	44	28	13	13	1.81
24084--24122	19	2.1	19	100	0	78	30	0	25	43	1.55
24087--24134	19	2.5	19	86	3	60	41	0	22	35	1.54
25787--25836	20	2.3	23	93	6	72	42	8	14	36	1.74
25787--25827	20	2.0	20	100	0	82	41	4	14	39	1.67
26205--26331	31	4.4	30	71	18	108	33	26	20	18	1.96
26241--26288	22	2.3	20	86	10	62	39	25	16	18	1.91
26208--26310	53	1.9	53	90	0	161	35	27	19	17	1.94
26776--26821	22	2.1	22	100	0	92	36	13	13	36	1.83
32994--33051	6	9.7	6	84	0	80	17	36	29	17	1.92
33942--33993	27	1.9	27	88	0	77	28	1	36	32	1.69
35162--35571	136	3.0	135	95	1	723	37	10	18	34	1.85
43912--43945	17	2.1	17	94	5	61	17	14	35	32	1.91
43938--43998	15	3.9	15	74	18	52	18	8	34	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43929--44015	32	2.7	32	89	0	120	14	10	35	39	1.81
43949--43998	15	3.2	15	74	20	57	18	10	36	36	1.84
44153--44211	16	3.7	16	79	0	64	6	13	27	52	1.65
45393--45515	65	1.9	65	84	3	167	31	11	20	36	1.88
58210--58333	53	2.3	53	81	2	142	23	17	25	33	1.96
58902--59015	38	3.0	38	89	2	185	26	26	28	18	1.98
58947--59354	91	4.6	91	72	14	321	23	28	26	21	1.99
58734--59106	127	2.9	129	84	5	488	23	26	27	22	1.99
59193--59284	37	2.5	37	83	3	114	26	27	29	17	1.97
59368--59625	75	3.4	75	95	0	453	12	29	37	21	1.89
59907--59974	28	2.5	28	87	2	111	29	20	26	23	1.99
63935--64007	31	2.5	30	82	12	82	41	10	15	32	1.82
64098--64127	15	2.0	15	100	0	60	33	26	20	20	1.97
64196--64261	31	2.1	31	86	5	89	50	12	13	24	1.76
69545--69579	15	2.3	15	90	5	52	71	14	0	14	1.15
75526--75603	30	2.6	30	87	2	122	17	28	14	39	1.89
75759--75825	30	2.3	28	84	5	89	43	10	25	20	1.84
78067--78235	31	5.5	31	80	2	151	15	26	24	33	1.95
78913--78957	21	2.1	21	87	4	63	35	8	37	17	1.81
87362--87468	53	2.0	53	96	0	196	38	14	10	37	1.80
93167--93208	7	5.9	7	84	15	59	66	14	14	4	1.40
96069--96112	3	14.7	3	100	0	88	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96696--96727	9	3.6	9	95	0	55	0	12	0	87	0.54
103481--103530	14	3.6	14	82	15	52	54	0	0	46	1.00
103886--103937	3	17.0	3	96	4	95	32	0	0	67	0.91

Tables:   1

The End!