genome.fa.s8828.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01008828.1 Corchorus capsularis cultivar CVL-1 contig08849, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66535

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2762--3006	121	2.0	121	100	0	490	17	32	11	38	1.85
16937--16978	22	1.9	22	95	0	75	28	9	0	61	1.27
23655--23698	2	22.0	2	90	0	70	45	0	4	50	1.22
23655--23698	18	2.4	18	100	0	88	45	0	4	50	1.22
24420--24641	32	6.9	32	89	2	320	27	20	6	45	1.75
24651--24973	41	7.9	41	93	0	513	22	21	9	46	1.80
25013--25809	41	19.6	39	70	18	333	27	17	11	43	1.83
25009--25328	123	2.6	123	84	4	394	28	17	11	43	1.83
25235--25429	101	1.9	101	89	2	302	30	17	9	43	1.80
25145--25689	183	3.0	178	80	12	560	27	18	10	43	1.83
25445--25579	69	1.9	71	87	3	202	27	18	11	42	1.85
25398--25809	110	3.6	109	84	5	423	26	17	11	44	1.83
25220--25825	151	4.1	152	75	9	500	27	17	10	44	1.82
25513--25809	80	3.8	81	78	12	320	26	17	11	45	1.82
25783--25884	53	2.0	51	86	3	141	22	11	6	58	1.56
25835--25944	41	2.7	41	94	4	188	27	11	8	52	1.66
32776--32815	19	2.1	19	90	4	62	37	5	7	50	1.53
60227--60251	1	25.0	1	100	0	50	0	0	0	100	0.00
60559--60648	44	2.0	46	91	4	148	26	18	16	37	1.92
61181--61244	32	1.9	34	87	6	96	28	21	0	50	1.49
62286--62321	19	2.0	18	89	10	56	44	0	19	36	1.51
65245--65311	34	2.0	33	85	8	91	58	11	7	22	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66207--66330	33	3.7	33	80	8	144	24	41	25	8	1.82

Tables:   1

The End!