Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009009.1 Corchorus capsularis cultivar CVL-1 contig09030, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52495

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--40
2
20.0
2
94
5
71
48
0
0
51
1.00
4723--4847
65
1.9
65
85
8
173
38
8
12
40
1.73
6560--6671
16
6.9
16
74
11
77
29
22
3
44
1.69
6559--6623
24
2.7
24
80
4
60
29
21
3
46
1.67
6708--6795
22
4.0
22
85
5
115
31
18
4
45
1.69
6738--6803
8
8.8
8
80
15
70
28
16
6
48
1.70
6712--6795
44
1.9
43
90
2
132
32
17
4
45
1.70
6757--7098
30
11.0
30
70
17
136
29
21
4
43
1.74
6725--6807
22
3.8
20
84
15
94
30
18
4
46
1.69
6704--7090
36
10.9
36
72
17
251
30
21
4
43
1.74
6876--7089
8
28.9
8
69
20
87
29
22
3
43
1.70
6826--6955
67
2.0
66
84
4
172
31
22
5
40
1.76
7133--7181
21
2.3
22
92
3
82
28
20
6
44
1.75
7147--7482
14
23.4
14
68
18
88
27
19
6
45
1.75
7189--7368
22
8.3
22
76
8
136
27
18
7
46
1.77
7190--7568
44
8.9
44
70
14
201
28
20
6
43
1.77
7278--7476
22
9.3
21
71
16
99
28
20
5
45
1.73
7373--7482
42
2.6
42
85
2
150
29
22
4
43
1.73
7373--7585
28
7.4
28
70
17
109
30
22
5
41
1.77
7373--7575
42
4.7
42
71
11
126
30
22
5
41
1.77
11833--11897
30
2.1
31
91
2
105
32
24
13
29
1.94
12124--12188
30
2.1
31
88
2
96
32
23
13
30
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11743--12349
291
2.1
293
93
1
1038
38
16
14
30
1.89
15976--16063
44
2.0
44
95
0
158
42
30
3
23
1.71
18685--18721
2
18.5
2
88
0
56
48
5
0
45
1.25
20882--20988
33
3.2
32
86
5
126
8
28
40
22
1.83
24760--24796
2
19.0
2
94
5
67
51
0
0
48
1.00
25963--25990
14
2.0
14
100
0
56
35
7
28
28
1.84
27053--27093
3
13.7
3
84
0
55
0
34
4
60
1.18
29709--29771
19
3.4
18
82
8
65
58
17
0
23
1.38
29890--29928
20
2.0
20
94
0
69
48
20
2
28
1.62
32834--32938
33
3.2
33
83
2
140
45
19
9
25
1.80
36434--36545
33
3.4
33
89
0
170
11
22
41
24
1.86
36459--36510
10
4.5
13
68
26
53
11
25
42
21
1.86
36748--36778
6
5.3
6
92
7
55
35
16
0
48
1.46
37307--37337
2
15.5
2
100
0
62
51
0
0
48
1.00
38596--38819
119
1.9
119
93
1
387
16
35
6
41
1.75

Tables:   1

The End!