Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009066.1 Corchorus capsularis cultivar CVL-1 contig09087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49675

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4101--4125
10
2.5
10
100
0
50
28
8
24
40
1.83
9696--9738
16
2.6
16
85
3
59
58
6
23
11
1.57
10824--10866
6
7.2
6
81
7
52
79
0
0
20
0.74
11302--11343
1
42.0
1
95
0
75
97
0
0
2
0.16
13886--13989
45
2.3
45
91
1
165
31
25
16
25
1.96
14269--15167
35
25.7
34
84
8
942
33
18
9
38
1.83
14269--15167
70
12.8
70
86
4
1124
33
18
9
38
1.83
14269--15167
105
8.6
105
85
3
1104
33
18
9
38
1.83
24458--24519
27
2.4
25
76
10
70
41
3
14
40
1.62
27455--27582
62
2.1
63
94
2
224
42
7
19
30
1.80
28405--28463
25
2.4
25
91
5
95
35
23
0
40
1.55
28473--28540
26
2.6
26
90
0
109
54
10
1
33
1.43
28473--28590
52
2.4
51
79
13
122
54
10
1
33
1.44
28666--28694
11
2.6
11
100
0
58
13
0
0
86
0.58
28788--28835
24
2.0
24
95
0
87
56
8
14
20
1.64
31694--31719
2
13.0
2
100
0
52
50
0
0
50
1.00
39223--39356
67
2.0
67
97
0
250
22
14
28
34
1.94
45183--45207
5
5.0
5
100
0
50
20
0
0
80
0.72
45940--45973
17
1.9
17
88
5
50
41
14
26
17
1.88
49506--49549
21
2.1
21
95
0
79
18
43
9
29
1.80
49620--49675
25
2.3
24
90
6
87
37
25
0
37
1.56

Tables:   1

The End!