Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009123.1 Corchorus capsularis cultivar CVL-1 contig09144, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104546

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39--101
32
1.9
32
84
9
83
11
38
41
9
1.73
374--459
16
5.4
16
79
8
104
16
10
33
39
1.83
354--459
32
3.3
32
89
2
169
15
9
36
38
1.79
607--666
16
3.8
16
81
0
66
6
10
30
53
1.60
622--680
16
3.7
16
81
0
73
8
11
27
52
1.66
638--702
16
4.1
16
78
11
71
7
12
29
50
1.67
619--696
32
2.5
31
89
6
120
7
11
29
51
1.66
4839--4942
52
2.0
52
100
0
208
32
17
23
26
1.96
9059--9088
15
2.0
15
93
0
51
30
0
0
70
0.88
19213--19239
2
13.5
2
100
0
54
48
0
0
51
1.00
25759--25814
23
2.4
23
79
8
60
19
42
19
17
1.89
25800--25851
25
2.1
25
88
0
77
28
32
23
15
1.95
25932--25998
27
2.5
26
84
13
84
26
44
16
11
1.82
27742--27770
15
1.9
15
100
0
58
13
27
10
48
1.75
39670--39708
16
2.5
16
87
4
53
20
25
2
51
1.60
39668--39708
15
2.7
15
84
3
55
19
24
2
53
1.57
40697--40732
19
1.9
18
94
5
63
0
13
0
86
0.58
40706--40733
14
2.0
14
100
0
56
0
14
0
85
0.59
58831--58858
1
28.0
1
100
0
56
100
0
0
0
0.00
64396--64524
47
2.5
53
78
15
162
17
17
16
48
1.81
64426--64548
47
2.6
47
92
0
201
19
16
15
48
1.81
67322--67414
45
2.1
45
97
2
179
37
19
13
29
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88866--88952
28
3.1
28
100
0
174
27
18
6
47
1.74
97371--97412
20
2.1
21
86
8
61
57
7
7
28
1.52
98003--98125
60
2.0
60
98
0
237
60
11
11
16
1.57
100623--100781
61
2.6
59
82
5
201
28
15
17
38
1.91
100969--101067
46
2.1
49
88
7
150
45
12
14
28
1.80

Tables:   1

The End!