Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009151.1 Corchorus capsularis cultivar CVL-1 contig09172, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23301

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--87
2
43.5
2
100
0
174
0
50
0
49
1.00
467--508
20
2.1
20
100
0
84
40
4
30
23
1.75
12398--12451
27
2.2
22
70
27
54
53
3
5
37
1.42
15368--15622
114
2.3
110
87
8
354
11
21
28
39
1.88
17806--17843
19
2.0
20
85
15
53
28
5
2
63
1.30
17899--18024
22
5.7
22
69
13
80
38
12
13
35
1.83
17895--18025
66
2.0
66
80
5
149
36
12
16
35
1.85
17947--18025
22
3.6
22
77
13
90
37
16
13
31
1.88
17970--18072
22
4.6
22
77
11
66
36
8
15
38
1.79
17898--18024
44
2.9
44
84
4
159
37
12
14
35
1.84
18115--18466
22
15.8
21
67
18
144
40
9
15
35
1.79
18133--18260
66
1.9
66
84
9
172
35
6
19
38
1.77
18338--18466
67
1.9
67
82
6
163
43
9
11
35
1.73
18361--18486
22
5.7
22
76
9
96
43
9
11
35
1.73
18611--18714
45
2.3
43
81
16
108
40
9
11
38
1.74
18592--19003
22
18.6
22
68
12
132
38
8
14
37
1.78
18652--18849
45
4.4
44
77
6
130
39
8
16
35
1.78
18765--18827
23
2.7
23
87
0
90
39
3
14
42
1.61
19183--19207
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!