Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009221.1 Corchorus capsularis cultivar CVL-1 contig09242, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165602

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2548--2580
15
2.1
16
88
5
50
45
0
12
42
1.41
15670--15705
12
3.0
12
91
0
54
30
19
25
25
1.98
21302--21374
29
2.4
29
84
8
85
42
16
23
17
1.89
37412--37776
109
3.4
106
90
4
560
41
9
7
41
1.66
58757--58796
3
13.3
3
100
0
80
67
0
32
0
0.91
61466--61493
2
14.0
2
100
0
56
50
0
0
50
1.00
77299--77346
22
2.3
20
86
10
62
39
25
16
18
1.91
77266--77368
53
1.9
53
90
0
161
35
27
20
16
1.94
77318--77416
31
3.2
31
83
0
117
34
27
20
18
1.95
82542--82711
81
2.1
81
94
0
295
36
25
22
15
1.94
94298--94356
13
4.6
13
77
12
68
32
0
0
67
0.91
95201--95496
109
2.7
109
89
4
423
49
1
11
37
1.48
97731--97760
6
5.0
6
91
0
51
20
0
46
33
1.51
137813--137856
2
23.0
2
81
9
56
52
0
0
47
1.00
144993--145024
2
16.0
2
100
0
64
50
0
0
50
1.00
149052--149079
2
14.0
2
100
0
56
0
50
0
50
1.00
159225--159318
45
2.2
43
88
7
138
39
23
5
31
1.77
159573--161360
331
5.4
330
79
5
1907
32
13
17
35
1.90
161495--162275
331
2.3
338
86
5
1082
32
15
16
36
1.90
163874--165602
326
5.3
320
81
7
1748
34
14
16
35
1.89
164167--165602
644
2.2
644
84
5
1823
34
14
15
34
1.89

Tables:   1

The End!