Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009223.1 Corchorus capsularis cultivar CVL-1 contig09244, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111600

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6082--6410
109
3.0
109
99
0
640
31
17
15
36
1.90
8414--8450
19
1.9
19
100
0
74
27
21
5
45
1.73
19543--19575
8
4.2
8
84
7
50
15
0
0
84
0.61
19543--19575
15
2.3
14
94
5
57
15
0
0
84
0.61
19867--19923
30
1.9
30
92
7
98
50
5
8
35
1.56
21056--21843
408
1.9
414
85
6
1092
36
18
13
31
1.90
21047--23175
399
5.4
393
82
8
2372
34
18
13
33
1.90
21047--23222
598
3.6
589
84
6
2564
34
18
13
33
1.90
21047--23225
194
10.9
197
77
11
2038
34
18
13
33
1.90
23839--23914
38
2.0
38
100
0
152
44
10
18
26
1.82
24594--24619
2
13.0
2
100
0
52
50
0
0
50
1.00
25887--25981
45
2.1
45
100
0
190
44
10
12
32
1.77
42678--42704
2
13.5
2
100
0
54
51
0
0
48
1.00
56507--56540
2
17.0
2
100
0
68
0
50
0
50
1.00
63013--63038
1
26.0
1
100
0
52
0
0
0
100
0.00
78097--78125
1
29.0
1
100
0
58
0
0
0
100
0.00
88114--88147
17
2.0
17
88
11
52
32
2
5
58
1.37

Tables:   1

The End!