Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009334.1 Corchorus capsularis cultivar CVL-1 contig09355, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70630

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1783--1878
32
3.0
32
81
7
97
22
21
29
26
1.99
5081--5111
14
2.2
14
100
0
62
32
12
9
45
1.75
11250--11281
16
2.0
16
100
0
64
37
6
18
37
1.76
12998--13146
76
2.0
76
89
2
228
20
12
41
24
1.88
13087--13146
30
2.0
29
90
3
93
21
10
40
28
1.85
15226--15544
22
14.6
22
69
12
165
42
10
13
34
1.78
15643--15757
44
2.7
43
78
4
106
39
8
13
39
1.75
15642--15757
22
5.3
22
72
4
83
39
8
12
38
1.75
15693--15749
21
2.6
22
76
13
64
38
5
14
42
1.68
15634--15757
65
1.9
66
80
8
146
39
8
12
39
1.73
20524--20566
13
3.3
13
78
12
52
11
6
0
81
0.87
20529--20566
20
1.9
20
88
0
58
10
5
0
84
0.77
20848--21131
120
2.4
120
90
2
437
27
25
24
22
2.00
23813--23867
21
2.6
21
83
11
60
34
16
23
25
1.95
23836--23891
21
2.7
22
83
10
73
39
17
19
23
1.92
30284--30386
27
3.6
28
73
18
104
26
16
28
29
1.97
30271--30361
27
3.0
31
71
19
102
25
15
32
26
1.95
30272--30384
59
1.9
59
100
0
226
26
16
30
26
1.97
30413--30437
1
25.0
1
100
0
50
0
0
100
0
0.00
32033--32121
44
2.1
41
87
6
124
35
1
13
49
1.50
32090--32124
15
2.3
15
90
5
52
31
0
11
57
1.34
33408--33452
21
2.1
22
91
4
74
20
42
8
28
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33708--33761
22
2.4
23
84
3
74
33
1
7
57
1.37
33968--34012
21
2.1
21
88
8
65
35
8
42
13
1.75
38150--38207
14
3.9
15
74
14
57
36
8
22
32
1.85
38054--38835
174
4.5
174
91
4
1164
38
10
18
32
1.85
38054--38835
35
22.7
35
86
5
1017
38
10
18
32
1.85
43464--43533
24
2.9
24
95
0
122
24
32
5
37
1.79
44626--44712
42
2.0
43
88
2
131
31
17
18
33
1.94
44828--44870
21
2.0
21
81
0
50
20
16
0
62
1.32
44838--44876
21
1.9
21
89
5
62
20
10
0
69
1.17
50376--50426
17
3.0
17
76
0
57
29
9
11
49
1.72
53733--53777
2
22.5
2
91
8
74
48
0
2
48
1.13
53720--53777
18
3.4
18
88
6
77
46
0
6
46
1.29
55490--55565
21
3.6
21
87
0
98
19
7
19
52
1.70
55535--55593
21
3.0
20
78
11
59
25
6
13
54
1.64
67076--67151
21
3.6
21
83
0
89
21
7
18
52
1.70
67123--67179
21
2.9
19
77
12
53
24
7
12
56
1.61
67552--67614
2
35.0
2
73
20
50
52
1
1
44
1.20
67545--67609
33
1.9
34
90
3
105
53
1
1
43
1.19
69018--69046
2
14.5
2
100
0
58
48
0
0
51
1.00
69110--69269
82
2.0
81
96
1
293
31
13
12
42
1.81

Tables:   1

The End!