genome.fa.s9346.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009346.1 Corchorus capsularis cultivar CVL-1 contig09367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24026

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73--376	22	13.9	22	71	21	112	18	19	7	53	1.68
85--396	43	7.1	42	77	10	268	19	19	7	53	1.68
184--428	64	3.9	62	75	15	214	20	20	6	53	1.68
350--383	14	2.4	15	90	9	54	26	14	2	55	1.53
186--396	21	9.9	21	80	8	153	20	19	7	52	1.69
678--819	55	2.6	55	91	0	221	26	19	6	48	1.72
1501--1838	51	6.7	50	78	4	365	37	16	4	41	1.68
1501--1838	101	3.3	101	94	1	588	37	16	4	41	1.68
1812--1866	20	2.8	20	88	0	74	36	16	9	38	1.80
4347--4415	26	2.6	25	83	4	66	40	24	17	17	1.90
12433--12485	25	2.1	25	89	0	79	9	11	15	64	1.50
12442--12488	24	1.9	25	91	4	78	8	14	14	61	1.55
17516--17635	64	1.9	63	85	6	165	50	5	18	25	1.67
17613--17698	32	2.7	31	85	7	109	48	6	22	22	1.74
17767--17877	32	3.6	31	79	8	111	54	3	24	17	1.58
17748--17877	32	4.2	31	82	7	83	56	3	23	16	1.54
17825--17877	16	3.3	16	75	19	65	54	3	22	18	1.59
17850--17958	40	2.7	40	95	0	191	53	2	22	22	1.59
17956--17989	16	2.1	17	88	5	52	58	2	20	17	1.51
17850--17974	40	3.2	39	90	7	175	52	3	22	21	1.61
18001--18076	32	2.3	33	88	6	111	52	3	18	25	1.62
18054--18110	26	2.2	26	90	6	89	52	3	15	28	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18112--18239	7	17.9	7	71	12	73	55	2	24	17	1.54
18105--18151	14	3.4	14	78	0	58	53	4	25	17	1.62
18105--18238	36	4.2	30	78	14	94	54	2	23	18	1.57
18121--18239	36	3.3	36	90	1	184	56	2	22	18	1.54
18195--18245	14	3.6	14	75	17	52	52	1	23	21	1.57
18141--18245	29	3.6	28	70	19	90	54	1	23	20	1.54
18230--18360	54	2.5	52	76	15	133	54	2	19	22	1.55
18253--18573	26	11.8	26	74	18	171	56	2	19	21	1.54
18365--18412	16	3.2	16	66	22	50	54	4	14	27	1.59
18283--18427	75	1.9	72	81	14	170	55	2	19	22	1.53
18357--18448	33	3.0	30	84	12	125	57	3	17	21	1.54
18357--18504	61	2.6	56	82	10	165	59	2	17	20	1.49
18415--18558	56	2.7	54	83	13	165	61	2	18	18	1.45
18416--18574	82	1.9	83	83	9	211	59	1	19	18	1.47
20061--20109	18	2.5	20	84	12	59	0	30	2	67	1.02
21990--22379	49	8.0	49	89	2	559	31	17	29	21	1.97

Tables:   1

The End!