genome.fa.s9489.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009489.1 Corchorus capsularis cultivar CVL-1 contig09510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  245288

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--7113	323	22.2	322	85	4	8930	33	15	16	34	1.91
8798--9005	20	10.2	20	72	2	155	29	28	6	36	1.82
8798--9005	41	5.1	41	92	1	321	29	28	6	36	1.82
9073--9294	122	1.8	122	86	3	322	42	21	21	13	1.88
16823--16902	2	42.0	2	76	14	62	53	1	1	43	1.16
17515--17562	20	2.3	20	75	10	53	41	2	6	50	1.39
17625--17695	2	37.0	2	78	13	78	50	1	1	46	1.18
21784--21812	1	29.0	1	100	0	58	100	0	0	0	0.00
40777--40862	33	2.5	33	88	5	100	20	8	46	24	1.78
40797--40862	33	2.0	33	100	0	132	21	9	45	24	1.80
41014--41108	45	2.1	45	98	0	181	20	12	44	23	1.85
41401--41523	57	2.2	57	98	0	237	21	4	49	23	1.69
64710--64746	19	1.9	19	89	10	58	37	13	32	16	1.87
74772--74801	1	30.0	1	100	0	60	100	0	0	0	0.00
76779--76817	19	2.1	19	100	0	78	15	5	15	64	1.46
83378--83438	31	2.0	31	96	0	113	49	4	21	24	1.69
90883--91001	59	2.0	59	96	0	220	20	20	24	35	1.96
99335--99740	202	2.0	197	85	4	546	36	18	16	28	1.93
113435--113615	103	1.8	98	82	8	229	34	17	13	34	1.89
114347--114401	26	2.1	26	100	0	110	23	27	14	34	1.94
123714--123748	17	2.0	18	94	5	63	54	11	0	34	1.37
129058--129100	21	2.0	21	95	0	77	39	11	23	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133764--133814	24	2.1	24	89	7	77	15	7	23	52	1.68
142873--142912	20	2.0	20	85	0	53	32	10	27	30	1.89
143382--143406	2	12.5	2	100	0	50	48	0	0	52	1.00
150596--150688	45	2.1	45	93	0	159	37	16	15	31	1.89
151314--151339	2	13.0	2	100	0	52	50	0	0	50	1.00
192816--192862	23	2.0	23	91	0	76	51	6	14	27	1.67
196920--196947	13	2.2	13	100	0	56	32	7	7	53	1.55
198697--198733	2	18.5	2	94	0	65	45	0	2	51	1.15
204325--204355	2	15.0	2	93	6	53	48	0	3	48	1.17
211472--211516	23	2.0	23	82	8	56	11	22	24	42	1.86
212747--212798	6	8.7	6	95	0	77	46	0	32	21	1.52
212749--212795	3	15.7	3	81	0	58	42	0	34	23	1.54
215761--215827	31	2.2	31	89	5	102	49	11	16	22	1.78
215957--216034	31	2.5	31	91	0	129	35	17	10	35	1.84
217020--217072	3	17.7	3	96	0	79	28	0	5	66	1.15
217140--217249	31	3.6	31	85	3	134	42	10	16	30	1.81
217377--217445	31	2.3	31	92	5	115	20	15	14	49	1.80
224731--224760	14	2.2	14	94	5	53	90	0	10	0	0.47
233929--233953	12	2.1	12	100	0	50	76	0	24	0	0.80
235389--235425	6	6.2	6	96	0	65	35	51	0	13	1.41
235379--235425	12	3.9	12	91	0	58	36	53	0	10	1.36
235750--235791	21	2.0	21	85	0	57	19	19	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236889--239558	328	8.1	327	81	7	2291	33	15	16	34	1.90
236898--239479	661	3.9	654	78	10	1837	33	15	16	34	1.90
236831--239559	991	2.7	979	77	9	2622	33	15	16	35	1.90
239099--240016	457	2.0	457	86	3	1287	31	16	16	35	1.91
239556--240347	331	2.4	330	86	5	1089	31	16	16	35	1.91
238770--241125	788	3.0	785	89	3	3597	31	16	15	35	1.91
240216--240459	127	1.9	128	87	5	361	23	22	18	36	1.95
240355--241605	330	3.8	327	88	3	1811	32	16	15	34	1.91
240355--241605	657	1.9	652	88	2	1900	32	16	15	34	1.91
241502--241691	102	1.9	101	80	7	224	41	11	13	33	1.80
241795--242648	444	1.9	444	93	0	1467	30	17	17	34	1.93
242326--243358	331	3.1	330	90	1	1597	32	16	15	35	1.91

Tables:   1

The End!