Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009548.1 Corchorus capsularis cultivar CVL-1 contig09569, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13218

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--5357
331
16.0
329
75
9
4161
34
17
15
32
1.91
7--3219
664
4.9
662
88
2
4355
34
17
15
32
1.91
3222--5357
663
3.2
660
85
6
2554
34
17
15
33
1.91
3222--5357
332
6.5
331
78
6
2214
34
17
15
33
1.91
5125--5556
234
1.9
232
80
5
514
34
16
13
34
1.88
5738--5845
54
2.0
53
85
1
144
42
11
17
28
1.83
5931--6007
38
2.0
38
90
5
120
49
16
10
23
1.77
6607--7020
41
10.1
41
84
6
509
28
15
17
39
1.90
6619--7119
41
12.6
38
79
7
314
27
15
17
39
1.90
6607--7020
83
5.1
83
84
4
531
28
15
17
39
1.90
6607--7020
167
2.5
164
84
6
552
28
15
17
39
1.90
7010--7055
15
2.8
16
83
16
58
17
13
13
56
1.67
7028--7058
15
2.1
15
100
0
62
19
12
12
54
1.70
7046--7120
38
2.0
38
89
0
114
26
20
14
38
1.91
7148--7297
50
3.1
47
80
8
165
29
17
20
33
1.95
7088--7310
57
4.3
51
77
12
215
27
17
18
36
1.93

Tables:   1

The End!