Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009585.1 Corchorus capsularis cultivar CVL-1 contig09606, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93953

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
994--1054
21
2.9
21
95
0
104
42
16
34
6
1.74
11076--11118
20
2.1
21
86
4
61
51
16
6
25
1.69
48230--48261
2
16.0
2
100
0
64
50
0
0
50
1.00
56391--56421
12
2.6
12
89
0
53
22
41
0
35
1.54
56535--56731
87
2.3
86
82
7
245
36
24
7
31
1.84
61021--61062
15
2.8
15
100
0
84
16
28
11
42
1.84
70527--71088
22
25.5
22
69
9
204
34
15
9
40
1.80
70840--70919
23
3.5
23
82
3
99
38
12
6
42
1.68
70796--70928
45
3.0
44
80
10
137
36
15
8
39
1.78
71173--71387
22
9.7
22
68
13
86
34
11
10
43
1.76
71197--71481
22
12.8
21
68
17
123
34
14
10
41
1.79
71498--71556
22
2.7
22
79
10
66
35
16
10
37
1.83
71442--71590
56
2.7
56
79
8
160
37
16
8
37
1.79
71599--71686
22
3.9
22
79
8
88
37
19
11
31
1.87
71599--71687
46
1.9
46
81
4
108
37
19
11
32
1.87
71647--71733
22
3.9
21
77
15
84
37
12
11
37
1.80
71900--71942
19
2.1
21
84
16
56
65
2
2
30
1.18
83742--83780
18
2.2
18
86
9
53
2
2
10
84
0.81
87383--87469
46
1.9
44
95
4
156
27
18
12
41
1.87
93590--93715
63
2.0
63
96
1
236
42
5
7
44
1.57
93590--93679
30
2.9
32
75
6
103
44
6
6
42
1.57

Tables:   1

The End!