Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009636.1 Corchorus capsularis cultivar CVL-1 contig09657, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60160

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
361--390
2
15.0
2
100
0
60
50
0
0
50
1.00
582--608
11
2.5
11
100
0
54
25
37
18
18
1.94
7909--8901
340
3.0
335
79
5
1091
32
14
15
37
1.88
9147--9935
333
2.4
328
80
8
867
34
13
15
36
1.87
9190--10167
333
3.0
319
78
8
816
33
14
15
36
1.88
12497--12622
66
1.9
66
88
0
189
25
19
17
37
1.94
12971--13003
7
4.7
7
85
14
50
12
0
0
87
0.53
15320--31532
981
16.6
971
90
4
15675
33
14
17
34
1.90
31372--31708
176
1.9
176
84
4
448
38
14
12
34
1.84
31038--32041
509
2.0
508
93
1
1744
35
14
15
35
1.87
31629--32441
332
2.4
331
91
2
1283
33
13
17
35
1.89
33360--33475
58
2.0
58
96
0
214
23
14
26
35
1.93
36176--36314
34
4.2
34
91
2
230
26
21
28
23
1.99
39035--39076
20
2.1
20
95
0
75
30
9
7
52
1.61
54086--54137
25
2.1
25
85
7
70
48
15
26
9
1.76
58957--58988
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!