Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009718.1 Corchorus capsularis cultivar CVL-1 contig09739, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88210

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
714--755
21
2.0
21
90
9
68
52
2
14
30
1.54
1041--1084
21
2.2
20
83
4
52
54
6
9
29
1.58
1211--1236
7
3.7
7
100
0
52
84
0
0
15
0.62
2933--2969
3
12.3
3
88
0
56
27
5
0
67
1.12
3198--3243
21
2.2
21
92
0
74
34
10
19
34
1.87
3685--3745
3
20.3
3
93
0
104
31
1
1
65
1.12
2933--4527
827
2.0
793
90
7
2527
37
11
11
39
1.78
4026--4071
21
2.2
21
96
0
83
36
10
17
34
1.85
4817--4885
21
3.2
21
91
6
104
52
0
10
37
1.36
5876--5950
29
2.6
28
79
8
80
38
21
2
37
1.68
13616--13652
14
2.8
14
88
8
51
56
8
35
0
1.29
15771--15808
10
3.9
10
86
6
60
0
18
0
81
0.69
17061--17097
18
2.1
18
100
0
74
18
0
5
75
0.99
20583--20610
8
3.5
8
100
0
56
89
0
0
10
0.49
24941--24967
14
1.9
14
100
0
54
7
7
0
85
0.75
37491--37536
23
2.0
23
91
4
76
30
15
15
39
1.88
39692--39720
14
2.0
15
93
6
51
20
6
10
62
1.50
42074--42114
20
2.0
20
90
0
64
24
24
9
41
1.85
42170--42204
11
3.1
11
84
8
52
74
2
2
20
1.08
43955--44003
21
2.3
22
80
16
59
51
38
0
10
1.36
46312--46341
15
2.0
15
100
0
60
13
20
20
46
1.83
49120--49154
11
3.2
11
83
0
52
77
17
5
0
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50281--50412
31
4.3
31
81
3
140
32
25
21
19
1.97
50282--50412
62
2.1
62
82
2
156
32
25
21
19
1.97
50749--51371
22
28.9
22
67
13
165
35
15
9
39
1.80
51058--51142
23
3.7
23
82
3
100
37
12
7
42
1.71
51036--51142
45
2.4
45
81
9
128
36
14
9
40
1.78
51255--51305
19
2.6
20
87
6
77
27
15
11
45
1.81
51386--51601
22
9.8
22
71
10
129
35
13
9
41
1.77
51641--51694
22
2.5
21
82
8
56
37
16
7
38
1.77
51656--51706
22
2.3
22
86
0
75
41
19
9
29
1.84
51712--51770
22
2.7
22
79
10
66
35
16
10
37
1.83
51806--51942
22
6.1
22
73
6
105
39
16
9
34
1.81
52111--52153
19
2.2
20
84
16
54
62
2
6
27
1.33
55688--55777
21
4.3
21
77
8
76
21
23
7
47
1.76
55751--55790
21
2.0
20
90
5
62
17
15
10
57
1.64
55751--55797
21
2.2
21
85
7
60
19
14
10
55
1.68
55785--56184
22
18.5
22
69
17
173
19
20
5
54
1.64
55798--55832
16
2.2
16
94
0
61
20
17
8
54
1.68
55793--56136
43
7.7
46
74
15
163
18
20
5
55
1.63
55895--56184
21
13.6
21
72
14
184
18
20
5
55
1.63
55895--56139
43
5.7
42
76
10
210
17
20
5
56
1.61
55897--56186
87
3.4
85
73
11
254
18
20
5
54
1.64
62151--62191
20
2.0
21
90
4
66
29
0
2
68
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63428--63466
3
12.3
3
89
10
60
66
0
0
33
0.92
65750--65784
17
2.1
17
94
5
63
60
5
5
28
1.43
67513--67589
40
1.9
40
89
0
118
20
37
20
20
1.94
67896--67970
31
2.5
31
86
8
109
26
16
16
41
1.88
71191--71228
3
12.7
3
100
0
76
34
0
0
65
0.93
71992--72016
3
8.3
3
100
0
50
32
0
0
68
0.90
77375--77412
17
2.2
18
90
4
60
42
5
5
47
1.48
78667--78747
29
2.7
29
86
3
108
25
22
12
39
1.89
79906--80189
103
2.7
105
84
10
379
41
9
7
42
1.64
80885--80915
5
6.0
5
92
7
53
0
38
0
61
0.96
83652--84963
440
3.0
432
82
5
1384
30
13
13
42
1.82

Tables:   1

The End!