Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009831.1 Corchorus capsularis cultivar CVL-1 contig09852, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69859

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26064--26107
22
2.0
22
100
0
88
27
9
18
45
1.79
41847--41880
2
17.0
2
100
0
68
50
0
0
50
1.00
43531--43566
2
18.5
2
94
5
65
50
0
0
50
1.00
48979--49020
22
1.9
22
85
0
57
2
16
11
69
1.29
54573--54628
28
2.0
27
89
3
85
32
10
14
42
1.80
54896--54934
20
2.0
19
85
5
51
15
17
2
64
1.41
54971--55043
30
2.4
30
86
8
96
30
13
9
46
1.75
56475--60064
322
11.1
321
85
5
4588
35
16
14
34
1.89
60362--69859
324
29.0
321
72
13
4584
36
16
13
33
1.88
63999--64433
211
2.1
213
88
3
637
38
14
16
31
1.88
63686--64756
535
2.0
536
87
2
1542
37
15
15
32
1.89
63350--65082
861
2.0
860
93
1
2992
37
15
14
32
1.88
64210--69857
325
17.6
323
81
7
5921
36
16
13
33
1.88
64210--69857
649
8.8
645
80
8
5897
36
16
13
33
1.88
66811--66840
2
15.0
2
100
0
60
50
0
0
50
1.00
67952--69816
959
1.9
959
85
4
2594
36
16
13
33
1.88
67846--69850
639
3.1
633
83
7
2420
36
17
13
33
1.88
67846--69856
320
6.2
318
85
6
2374
36
17
13
33
1.88

Tables:   1

The End!