Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009859.1 Corchorus capsularis cultivar CVL-1 contig09880, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84518

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--42
2
20.5
2
95
4
75
50
0
2
47
1.14
821--845
5
5.0
5
100
0
50
80
0
20
0
0.72
1065--1100
3
12.0
3
93
0
63
33
2
0
63
1.08
1065--1109
12
3.8
12
91
5
56
33
6
0
60
1.23
8905--9606
233
3.0
233
99
0
1395
33
14
21
30
1.93
11572--11608
2
18.5
2
100
0
74
48
0
0
51
1.00
29526--29575
25
2.0
26
92
4
84
42
10
10
38
1.72
30297--30421
12
9.9
12
68
16
74
24
56
9
9
1.62
30380--30433
24
2.2
24
76
0
63
18
57
7
16
1.62
30418--30486
18
3.8
18
76
0
66
23
53
8
14
1.68
30461--30534
24
3.1
24
76
0
85
18
60
6
13
1.54
30472--30513
15
2.8
15
75
13
50
19
64
2
14
1.39
30503--30546
18
2.4
18
88
0
61
20
61
9
9
1.53
30587--30630
18
2.4
18
88
0
61
20
59
4
15
1.54
30605--30673
24
2.9
24
76
8
68
26
60
2
10
1.42
45598--45713
31
3.8
31
82
3
146
18
28
25
28
1.98
45687--45737
24
2.1
24
92
0
84
15
29
25
29
1.96
55881--55914
2
17.0
2
100
0
68
50
0
0
50
1.00
58605--58657
26
2.0
26
92
0
88
13
18
35
32
1.90
71136--71175
14
3.1
14
79
20
59
17
7
15
60
1.57
81444--84514
647
4.7
645
88
2
4244
35
16
14
33
1.90
81444--84514
323
9.5
322
88
2
4222
35
16
14
33
1.90

Tables:   1

The End!