Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009872.1 Corchorus capsularis cultivar CVL-1 contig09893, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7909

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1016--1196
8
24.5
8
70
13
97
44
2
20
32
1.66
1016--1210
22
8.8
23
75
14
121
45
2
20
31
1.65
1021--1220
14
13.8
14
74
15
101
45
3
20
31
1.66
1078--1203
6
18.2
6
69
22
54
44
3
20
31
1.67
1063--1216
36
4.5
35
77
17
139
44
3
20
31
1.68
1062--1145
27
3.0
26
87
8
105
45
1
20
33
1.59
1300--1502
8
27.5
8
66
21
56
43
4
22
28
1.74
1321--1473
14
11.0
14
70
19
115
45
3
22
28
1.70
1328--1440
6
16.3
6
70
23
55
45
3
22
29
1.69
1320--1502
22
8.6
22
73
14
143
43
4
22
29
1.73
1336--1474
30
4.9
29
75
15
121
44
4
23
28
1.72
1596--1685
8
11.2
8
72
11
69
46
4
23
25
1.71
1587--1684
24
4.0
24
79
2
106
44
5
23
26
1.74
1592--1684
48
1.9
49
84
2
125
46
4
23
25
1.71
2686--2724
8
5.1
8
81
12
55
12
12
0
74
1.08
2687--2720
7
4.7
7
85
7
50
11
11
0
76
1.02
2686--2724
14
2.6
16
88
12
64
12
12
0
74
1.08
2685--2735
22
2.3
21
80
9
57
13
11
0
74
1.07
3407--3471
32
2.0
33
93
3
114
38
16
6
38
1.74

Tables:   1

The End!