Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011324.1 Corchorus olitorius cultivar O-4 contig11357, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21168

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--492
41
12.7
38
77
14
429
25
15
22
37
1.93
15--492
71
6.2
74
80
12
424
24
15
22
37
1.93
15--492
35
12.4
41
78
12
378
24
15
22
37
1.93
16--492
190
2.5
185
85
10
581
24
15
22
37
1.93
15--492
231
2.1
228
88
5
696
24
15
22
37
1.93
2257--2284
2
14.0
2
100
0
56
50
0
0
50
1.00
2610--2653
16
3.0
14
87
12
54
61
18
9
11
1.55
5289--5328
15
2.6
16
92
4
64
65
12
10
12
1.49
11639--11668
3
10.0
3
92
0
51
66
0
30
3
1.07
14151--14202
22
2.4
23
81
12
65
50
1
0
48
1.12
14652--14741
16
5.6
16
71
5
65
7
13
36
42
1.73
14916--14946
13
2.5
13
94
5
55
61
0
0
38
0.96
15218--15289
31
2.3
33
74
13
80
61
5
5
27
1.41
15526--15564
2
20.5
2
84
10
55
46
2
0
51
1.14

Tables:   1

The End!