genome.fa.s11468.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011468.1 Corchorus olitorius cultivar O-4 contig11501, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6586

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144--244	52	2.0	51	96	2	184	25	15	14	43	1.86
1--397	205	1.9	204	90	1	625	22	16	19	40	1.91
198--555	155	2.3	153	88	1	520	20	17	20	41	1.91
506--609	52	2.0	51	88	1	154	24	16	16	43	1.87
1--900	360	2.5	358	89	1	1385	21	18	19	40	1.92
351--762	204	2.0	207	90	1	650	20	19	19	40	1.91
558--1374	154	5.3	154	87	2	1162	22	18	18	40	1.91
558--1371	307	2.6	305	87	2	1166	22	17	19	40	1.91
1326--1426	52	1.9	52	100	0	202	23	15	16	43	1.87
1171--1577	207	2.0	206	92	2	674	22	16	18	41	1.90
1017--1733	361	2.0	359	88	2	1080	23	17	18	40	1.91
1378--1890	153	3.3	154	90	1	807	23	19	18	38	1.93
1838--1939	52	2.0	51	96	1	186	23	17	16	42	1.89
1532--2607	358	3.0	358	89	1	1656	23	18	18	40	1.92
1685--2079	205	1.9	205	91	1	648	22	17	18	41	1.91
1890--2245	154	2.3	153	89	1	532	21	17	19	41	1.90
2197--2295	52	1.9	50	89	4	153	25	15	16	43	1.86
2043--2449	204	2.0	206	88	1	604	24	18	17	40	1.91
2249--3065	154	5.3	153	88	1	1163	23	19	18	39	1.92
2249--4354	308	6.7	307	75	12	1679	21	18	18	40	1.91
2707--3426	359	2.0	361	89	2	1092	21	18	18	41	1.90
3067--4354	154	8.3	154	89	3	1842	20	18	19	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4308--4406	52	1.9	52	95	0	180	24	15	17	43	1.87
4154--4560	206	2.0	206	93	0	699	22	17	18	41	1.90
4360--4716	154	2.3	154	90	1	572	21	17	19	42	1.90
3996--6201	360	6.0	359	72	13	1791	22	18	19	40	1.92
4664--4767	52	2.0	51	90	1	163	23	16	17	43	1.88
4510--4921	205	2.0	206	90	1	657	21	18	18	41	1.90
4716--5844	154	7.3	154	89	1	1674	22	18	19	39	1.92
5336--6559	511	2.4	511	90	3	1857	23	17	18	40	1.92
5851--6354	155	3.3	154	91	2	786	24	17	19	39	1.91
6306--6410	52	2.0	52	92	0	174	24	14	17	43	1.86
6151--6559	207	2.0	206	91	1	658	22	16	18	42	1.89

Tables:   1

The End!