Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011477.1 Corchorus olitorius cultivar O-4 contig11510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40688

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4574--4605
15
2.1
15
94
0
55
46
6
9
37
1.61
4566--4608
22
2.0
22
85
0
59
41
6
9
41
1.64
8334--8624
76
3.8
76
93
0
474
15
25
38
21
1.92
9390--9632
76
3.2
76
89
0
351
15
25
37
21
1.93
16459--16557
22
4.5
22
78
6
94
43
13
7
36
1.71
16459--16557
43
2.3
44
85
1
128
43
13
7
36
1.71
16564--16658
22
4.5
21
76
9
77
27
13
9
49
1.73
18709--18735
2
13.5
2
100
0
54
48
0
0
51
1.00
18774--18808
2
17.5
2
100
0
70
48
0
0
51
1.00
18709--18849
73
1.9
73
100
0
282
36
11
8
43
1.71
22084--22755
72
9.1
71
81
7
722
21
35
25
18
1.96
22084--22742
148
4.5
148
87
4
829
21
35
25
18
1.96
28855--28895
2
20.5
2
100
0
82
48
0
0
51
1.00
29064--29151
44
2.0
43
95
2
158
31
17
14
36
1.90
29279--29317
17
2.3
17
100
0
78
58
0
17
23
1.38
31414--31468
26
2.1
26
86
0
74
12
41
10
34
1.78
35460--35497
3
12.7
3
100
0
76
34
0
0
65
0.93
38832--38918
29
2.9
29
72
3
84
33
11
20
34
1.89

Tables:   1

The End!