Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011901.1 Corchorus olitorius cultivar O-4 contig11934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3148

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--902
307
2.9
308
89
2
1378
22
18
18
40
1.91
1--901
154
5.9
154
90
1
1355
22
18
18
40
1.91
817--986
84
2.0
84
93
2
288
25
14
17
42
1.87
663--1139
238
2.0
238
92
2
789
23
17
19
40
1.91
901--2681
154
11.6
152
89
4
2505
21
17
19
41
1.91
901--2681
463
3.9
464
89
3
2677
21
17
19
41
1.91
2596--2765
85
2.0
84
91
3
279
23
14
18
44
1.86
2681--3148
154
3.0
154
92
1
776
21
18
19
40
1.91

Tables:   1

The End!