genome.fa.s11919.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011919.1 Corchorus olitorius cultivar O-4 contig11952, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8574

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--1187	154	7.6	154	88	4	1659	21	18	18	41	1.91
4--1187	307	3.8	309	87	5	1633	21	18	18	41	1.91
1074--1309	123	1.9	122	90	3	370	23	18	16	41	1.89
757--1616	430	2.0	430	91	2	1379	21	19	18	40	1.91
1188--1740	153	3.6	153	89	2	833	20	19	19	40	1.91
4--1740	584	2.9	584	86	6	2086	21	19	18	40	1.91
2690--3664	154	6.3	154	90	1	1499	20	18	20	40	1.91
3616--3732	61	1.9	61	85	3	164	19	18	23	37	1.94
3729--3972	121	2.0	123	91	1	393	22	16	18	42	1.89
3852--4252	154	2.6	154	89	2	601	21	17	18	41	1.90
4206--4303	52	1.9	51	89	2	151	26	13	15	44	1.83
4052--4457	205	2.0	206	89	0	616	23	17	18	40	1.91
4258--5077	154	5.3	153	90	1	1230	22	18	19	39	1.92
5029--5129	52	1.9	52	93	0	175	23	14	17	43	1.87
4875--5283	206	2.0	206	90	0	649	22	17	19	41	1.91
5075--5591	154	3.4	154	90	1	770	21	18	19	40	1.91
5544--5642	51	1.9	51	87	4	146	24	15	17	43	1.87
5389--5796	205	2.0	206	88	2	615	22	17	18	41	1.91
5595--6474	154	5.7	154	90	1	1336	20	19	19	40	1.92
5602--6474	307	2.8	308	91	1	1392	20	19	19	40	1.92
6412--6527	61	1.9	62	89	1	180	14	20	25	39	1.91
6263--6686	214	2.0	215	91	0	697	19	18	21	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6474--8574	309	6.8	308	89	2	3108	20	19	19	40	1.92
6474--8574	154	13.7	154	90	2	3118	20	19	19	40	1.92

Tables:   1

The End!